Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7262 188 5e-43 seq11601 95.1 8e-15 seq9235 95.1 8e-15 >seq7262 Length=177403 Score = 188 bits (208), Expect = 5e-43 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || ||||| ||| | || ||||||||| ||||| ||||| Sbjct 142374 ATGGCTACCGTAAACGTGAACCGTAACGTGACCGATATGTTCTACCGGTACAAGATGCCT 142433 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| |||||||| |||||||| |||||||| || || || || || || |||||| Sbjct 142434 CGCATCAATGCCAAGGTAGAGGGTAAAGGAAACGGCATCAAGACGGTGATCGTGAACATG 142493 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| |||| ||| |||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 142494 GCGGAAGTGGCTAGAGCGATCGGTCGCCCCGCCACCTATCCGACCAAGTACTTCGGTTGC 142553 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| ||||||||||| ||||| ||||| Sbjct 142554 GAACTTGGAGCTCAGACGCAATTTGACCACAA 142585 Score = 188 bits (208), Expect = 5e-43 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| || ||||| ||| | || ||||||||| ||||| ||||| Sbjct 148733 ATGGCTACCGTAAACGTGAACCGTAACGTGACCGATATGTTCTACCGGTACAAGATGCCT 148792 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| |||||||| |||||||| |||||||| || || || || || || |||||| Sbjct 148793 CGCATCAATGCCAAGGTAGAGGGTAAAGGAAACGGCATCAAGACGGTGATCGTGAACATG 148852 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| |||| ||| |||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 148853 GCGGAAGTGGCTAGAGCGATCGGTCGCCCCGCCACCTATCCGACCAAGTACTTCGGTTGC 148912 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| ||||||||||| ||||| ||||| Sbjct 148913 GAACTTGGAGCTCAGACGCAATTTGACCACAA 148944 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || ||||| |||| | | |||||||||||||| | || || Sbjct 142969 AACGAACGCTTCATTGTGAACGGTGCGCACGATGCCACCAAGCTGCAGGACCTGCTCGAT 143028 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || |||||| ||| || ||||| | ||| ||||||||||||||||| || || || Sbjct 143029 GGATTCATTCGCCGGTTCGTCCTGTGCCCGGAGTGCGATAACCCGGAGACGGACCTGATA 143088 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| || ||||| ||||| ||||| |||||||| | ||| || | Sbjct 143089 GTTTCGTCGAAGAAGGGTACGATCTCGCAGGGATGCAAGGCGTGCGGCTTCCACGGTCCG 143148 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || | ||||| | ||||| ||||| | ||||| || || Sbjct 143149 CTCGAGGTCAACCACAAGGTGAACACGTTCATCATCAAGAACCCGCC 143195 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || ||||| |||| | | |||||||||||||| | || || Sbjct 149328 AACGAACGCTTCATTGTGAACGGTGCGCACGATGCCACCAAGCTGCAGGACCTGCTCGAT 149387 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || |||||| ||| || ||||| | ||| ||||||||||||||||| || || || Sbjct 149388 GGATTCATTCGCCGGTTCGTCCTGTGCCCGGAGTGCGATAACCCGGAGACGGACCTGATA 149447 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| || ||||| ||||| ||||| |||||||| | ||| || | Sbjct 149448 GTTTCGTCGAAGAAGGGTACGATCTCGCAGGGATGCAAGGCGTGCGGCTTCCACGGTCCG 149507 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || | ||||| | ||||| ||||| | ||||| || || Sbjct 149508 CTCGAGGTCAACCACAAGGTGAACACGTTCATCATCAAGAACCCGCC 149554 >seq11601 Length=7614 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 2324 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 2383 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 2384 GGCGGTATTTAGCTTTA 2400 >seq9235 Length=820 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 495 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 436 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 435 GGCGGTATTTAGCTTTA 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334806916262315