Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2173 453 2e-122 >seq2173 Length=41539 Score = 453 bits (502), Expect = 2e-122 Identities = 1206/1799 (67%), Gaps = 74/1799 (4%) Strand=Plus/Minus Query 243758 ACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGG 243817 ||||||| ||| || | || ||||||||||| ||||| || || | ||| |||||| Sbjct 18545 ACGGCGGGCTTCGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGG 18486 Query 243818 AGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGG 243877 | |||||| | ||||||||| | | || || ||| ||| | || || | Sbjct 18485 AAGTGCATCGACGTCAGCTTGC----CGT-AG--TTCGGT--TCCGC---CACGTGGATG 18438 Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATG-AGGTC 243936 |||| ||||| |||||||| ||| | |||| || || ||||| |||| | || Sbjct 18437 TTGAACGACTGCGACTGGTCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTT 18378 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTA--GATGG-GCTTGAGGTGCTCGGGGAACCC 243993 ||| || ||||| | |||| ||||| ||| | || | | || || | Sbjct 18377 -TTCACCGAAATCTCCCAAACCGTTTTGTACAGATCGCGC---ACTTCCTTCGGTATTTG 18322 Query 243994 TTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG-CATGTTATCGTTCC 244052 ||||||||||| | |||||| |||||| | | || || || | ||| | ||||| || Sbjct 18321 CTCGATGTTCTGGATCGAGCCGTTGTGGGCCAGGAT-TGTGTTCTTCATATCATCGTCCC 18263 Query 244053 ACAGGCCCAA-GCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCC 244111 |||| || | | || || ||| || |||||| |||||||||||||||||| ||| Sbjct 18262 ACAGACCGTGCGTGGTC-AGATCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCC 18204 Query 244112 GACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCC 244171 ||||| ||||| || | ||| | |||| | |||||||| ||| |||||||| Sbjct 18203 GACAGAACGCGCCGGTTGTAAACGTTGGACGTATACGGCTCGAACGACTCGTTGTTGCCC 18144 Query 244172 AGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCG 244231 | || || ||||| || |||||||| |||| | |||||| ||| | ||| ||| Sbjct 18143 AAAATTTGTGCCGTCGAAGCCGTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCG 18084 Query 244232 TGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA-GTCCCACATGCCCGAGAGGTCC-TCGC 244289 || | ||| | ||| || ||| ||| | || || | |||||| ||| Sbjct 18083 TG--TTTGGC-----AATCTTT--TCCTTCAGCGTCGCCCAATTCC-ACAGGTCCGTCG- 18035 Query 244290 GTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGG 244349 || | ||||||||| ||||||| | |||||||| || || |||||||| | Sbjct 18034 GTACCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTCACCGGAGACCCCTCGTACG 17975 Query 244350 TCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGA 244409 || ||| || || || | ||||| || ||||| | || || || ||||||||| Sbjct 17974 TCTCGTACGGTCCCTCCTGGGCGGCCATCTCGCAGCTAGCTTCCAGCGCACCGTAGTAGA 17915 Query 244410 TGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCC 244467 ||||||| || ||| || || | | | |||| ||||| | | |||| ||| Sbjct 17914 TGGTCTCAAATATCTGCTGATTGAGCTTCTGCGCCT--CCGCACTCTCGTACGGGAAGCC 17857 Query 244468 CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTT 244527 ||||| ||||| | || |||| ||||| |||||||| ||||| || | ||| ||| | Sbjct 17856 CATCAAGATGAACGCATCAGCCATACCCTGGACGCCGATACCGATCGGACGGTGGCGCAT 17797 Query 244528 GTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT 244587 ||| |||||| | ||||| ||||| ||||| ||||| ||||||| | |||||| | ||| Sbjct 17796 GTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAGTTCACGTCGATAATCTTGTTCAAGTT 17737 Query 244588 GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTC 244647 ||| || | || | | || || |||| | || || ||| ||| || || Sbjct 17736 GCGCGTCACGATTTTGGCTACCTCTTTCAGCTTCGCGAAATCATAC--GTACGG----TC 17683 Query 244648 GGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCAC 244707 || ||| || ||| ||| | || | |||||||||||| || ||||| Sbjct 17682 GGAC-TGG--------ACGAACATGTTCAACGCAATCGAGGCCAGGTTGCACACCGCCAC 17632 Query 244708 CTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCC 244767 || ||| | ||||| |||||||||||||| |||||| ||||||||||||||| Sbjct 17631 TTCGTCCTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTTAGAGCACTTGATGGTGCC 17572 Query 244768 CAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCC 244827 | || || || ||| ||| ||||| ||||||||||| |||||| | || | || Sbjct 17571 GATGTTTTGCTGGTTGCTTTTGCGATTGCACGCGTCCTTGTACAGCATGTACGGTACGCC 17512 Query 244828 GGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACC-GTCCTG 244885 ||||| | ||||| ||| || ||| ||| || ||| ||||| ||| | | Sbjct 17511 CGTCTCCACCTGGGATTCGATGATCGC-AAACCACAGATCCTGCGCCTTTACCTGGCGGA 17453 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 || | |||||| ||| |||| ||||||| ||||||||| |||||| Sbjct 17452 TGAAGC-GGCCCTCCTTCTCATAGCCCGTGTACAACTTCTCGAACTCTTCGCCCCACGAA 17394 Query 244946 TCGTCTAGGCCGGGGCACGACG-CCGGGCACATGAGACTCCAC---TCG-CCGCCGTCCT 245000 ||| | | ||||| || | || ||||||||| | ||||||| ||| |||| ||| Sbjct 17393 TCGGCCAATCCGGGACA-GTCGTGCGGGCACATCAAACTCCACGTTTCGTTCGCC-TCC- 17337 Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060 || | ||||||||| || || || |||||||| || | ||| | ||||| | | | Sbjct 17336 --ACGCGCTGCATGAACAGATCCGGAATCCAGAGCGCGTAGAACATGTCCCGTGCGCGCA 17279 Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120 ||| ||| ||| ||||| ||| |||| |||||||| ||||| || ||| ||||||| | Sbjct 17278 CCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAAAAACTCAAACACATCGCCGTGCCACG 17219 Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTC 245179 |||||| ||||| || | || || |||||||| ||||| ||||| || || | | | Sbjct 17218 GCTCCAGGTAGATGGCAAACGCACCCGGCCGCTTATTGCCGCCCTGATCGACGTACCGTG 17159 Query 245180 TCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCC 245239 || | |||| | | |||||| | ||||| | ||||| || ||||| ||||| Sbjct 17158 CCGTG-TTGTTGTACACGCGCAGCATCGGCACCAACCCGTTCGAAATTCCGTTCGTGCCG 17100 Query 245240 TTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGC 245299 |||||| | ||||| ||| || | | | | || || | || ||||| | Sbjct 17099 GAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCAGCCCGATGCCACCGGCAGAC 17040 Query 245300 TTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTC 245359 |||||||| || ||||| ||| | ||||| ||||| || |||||||| | Sbjct 17039 TTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCTTCGATGCTGTCGTCGGAC 16980 Query 245360 ATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG-CTTGGGGCTGCACGAGTTGAACAGAGT 245418 ||| | ||||||||||| || ||||||||||| | | | || || ||||| || Sbjct 16979 ATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTAGC-CGCCGCGAACATGGT 16921 Query 245419 GGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTC 245478 || ||| ||||||||||| || |||||| | ||||||| || | ||| || Sbjct 16920 CGGCGAGGCATGGGTAAAGTAACGCTCCGAGAGCAGATTATACGTCTCGATCGCAGCCTC 16861 Query 245479 GATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGA 245537 ||||| ||| ||||| | |||| | ||| || | ||||| ||| |||||| Sbjct 16860 GATGTCCGTGCCATGGATGCCGATGGCGACGCGCATCAGCATATGCTGCGGCCTCTCGA 16802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943933547292400