Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq26551 89.7 1e-12 seq27055 87.8 4e-12 >seq26551 Length=145895 Score = 89.7 bits (98), Expect = 1e-12 Identities = 263/403 (65%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| ||||| |||| ||| |||| || || ||| || | || |||| ||||| || Sbjct 15938 CCAGGCGTCCACGTCCGAGCTGTACGGGAAGGTGGTGGAGACGCCGCAGAACGAAAAGAC 15879 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || ||||| || || |||| ||||||| |||||| || ||||| | Sbjct 15878 ACCATTCTATCCGCGCTCGCCGTACGCATGTGCAAAGATGTACGGCTACTGGATAGTGAT 15819 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || || || ||| |||| || |||| | |||||| ||| ||||| |||||| Sbjct 15818 CAACTATCGCGAGGCGTACAATATGTTCGCCTGCAACGGGATCCTGTTCAACCACGAGTC 15759 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| | || | | || ||||| || || ||||| ||| ||||| |||| Sbjct 15758 ACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATCACCCGCTCGGTGGCGAAGATTTC 15699 Query 72656 CAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATA 72715 ||| | | ||| | | || |||||| | ||| | || | || ||||| | Sbjct 15698 GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATCTCGATTCGAAGCGCGACTGGGGCCA 15639 Query 72716 TGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA 72775 || || || ||||| || || |||||||||||| |||| || || ||||| || | Sbjct 15638 CGCCAAAGACTACGTTGAGGCGATGTGGTTGATGATGCAGCAGGAGCAGCCGGAAGATTT 15579 Query 72776 TGTGATTGCAACAGG-GAAAACAACGAGCGTTCGTGAGTTCGT 72817 ||| || || || || |||| || | || |||||||| || Sbjct 15578 TGTCATCGCGACGGGCGAAACGCACTCG-GTGCGTGAGTTTGT 15537 Score = 89.7 bits (98), Expect = 1e-12 Identities = 263/403 (65%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| ||||| |||| ||| |||| || || ||| || | || |||| ||||| || Sbjct 17304 CCAGGCGTCCACGTCCGAGCTGTACGGGAAGGTGGTGGAGACGCCGCAGAACGAAAAGAC 17245 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || ||||| || || |||| ||||||| |||||| || ||||| | Sbjct 17244 ACCATTCTATCCGCGCTCGCCGTACGCATGTGCAAAGATGTACGGCTACTGGATAGTGAT 17185 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || || || ||| |||| || |||| | |||||| ||| ||||| |||||| Sbjct 17184 CAACTATCGCGAGGCGTACAATATGTTCGCCTGCAACGGGATCCTGTTCAACCACGAGTC 17125 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| | || | | || ||||| || || ||||| ||| ||||| |||| Sbjct 17124 ACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATCACCCGCTCGGTGGCGAAGATTTC 17065 Query 72656 CAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATA 72715 ||| | | ||| | | || |||||| | ||| | || | || ||||| | Sbjct 17064 GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATCTCGATTCGAAGCGCGACTGGGGCCA 17005 Query 72716 TGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA 72775 || || || ||||| || || |||||||||||| |||| || || ||||| || | Sbjct 17004 CGCCAAAGACTACGTTGAGGCGATGTGGTTGATGATGCAGCAGGAGCAGCCGGAAGATTT 16945 Query 72776 TGTGATTGCAACAGG-GAAAACAACGAGCGTTCGTGAGTTCGT 72817 ||| || || || || |||| || | || |||||||| || Sbjct 16944 TGTCATCGCGACGGGCGAAACGCACTCG-GTGCGTGAGTTTGT 16903 >seq27055 Length=447146 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 325333 ACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCA 325392 ||| ||| |||||| ||||| ||| | || ||||||||| || |||| |||| | Sbjct 54156 ACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAACTGACCTCCCGGAAACAGCAG 54097 Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 |||||||| ||||| ||||| || | ||| || ||||||||||| ||| || || Sbjct 54096 ATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTCACGATCGTCGAGCAAAGTGA 54037 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 |||||| ||||| |||||| || || || |||| | ||| || ||||| Sbjct 54036 CTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACCGAACCCGCCAGCTGCGCCACCTT 53977 Query 325513 CAC--GTCGGTCGTCAAATTGCGCTTGAA 325539 ||| ||| | ||| ||| |||||||| Sbjct 53976 CACCTCTCGCTTGTC--ATTACGCTTGAA 53950 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 325333 ACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCA 325392 ||| ||| |||||| ||||| ||| | || ||||||||| || |||| |||| | Sbjct 65625 ACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAACTGACCTCCCGGAAACAGCAG 65684 Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 |||||||| ||||| ||||| || | ||| || ||||||||||| ||| || || Sbjct 65685 ATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTCACGATCGTCGAGCAAAGTGA 65744 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 |||||| ||||| |||||| || || || |||| | ||| || ||||| Sbjct 65745 CTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACCGAACCCGCCAGCTGCGCCACCTT 65804 Query 325513 CAC--GTCGGTCGTCAAATTGCGCTTGAA 325539 ||| ||| | ||| ||| |||||||| Sbjct 65805 CACCTCTCGCTTGTC--ATTACGCTTGAA 65831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179134996324470