Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2173 288 1e-72 >seq2173 Length=41539 Score = 288 bits (318), Expect = 1e-72 Identities = 1076/1669 (64%), Gaps = 61/1669 (4%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | || || | ||||||||| |||||| ||||| | | ||||| | |||| | Sbjct 16738 TACAACTATTTCGGCTTCAAAACCCTGGAGCGTTCGTATTTGTTGAAGATCAAGGGCAAG 16797 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||| | ||||| || |||||||||||||||||||||| || || ||| ||| Sbjct 16798 ATTGTCGAGAGGCCGCAGCATATGCTGATGCGCGTCGCCATCGGCATCCATGGCACGGAC 16857 Query 93838 AT-------GC---CGA-ATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATA 93886 || || ||| | || | ||| || ||| || || | || Sbjct 16858 ATCGAGGCTGCGATCGAGACGTATAATCTGCTCTCGGAG-----CGTTAC------TTTA 16906 Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 || ||| | |||||| ||||| |||| || | | || ||| |||| || || | Sbjct 16907 CCCATGCCTCGCCGACCATGTTCGCGGCGGCTACGCAGCGTCCCCAGCTGTCGTCTTGCT 16966 Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 | ||| |||| | | |||| |||| || || | ||||| || ||| | || | Sbjct 16967 TTCTGCTGACCATGTCCGACGACAGCATCGAAGGCATCTACGACACGCTGAAGCAGTGCG 17026 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066 | ||||| || | || || || |||||| | | || ||| | | || || | || Sbjct 17027 CACTGATCTCCAAGTCTGCCGGTGGCATCGGGCTGAACGTGCACTGCATCCGGGCGAAGG 17086 Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126 | | |||||| ||| || || || | || ||||| | || || ||||| || || | Sbjct 17087 GAACGTACATCTCCGGCACGAACGGAATTTCGAACGGGTTGGTGCCGATGCTGCGCGTGT 17146 Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186 ||||||| |||| || ||||| || ||||| || | | || |||| | || || Sbjct 17147 ACAACAACACGGCACGGTACGTCGATCAGGGCGGCAATAAGCGGCCGGGTGCGTTTGCCA 17206 Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246 |||| || ||||| ||||||| || ||| | || | || ||| || ||| || Sbjct 17207 TCTACCTGGAGCCGTGGCACGGCGATGTGTTTGAGTTTTTGGATCTGAAGAAAAACACCG 17266 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 |||| || || | | || | ||| | |||||||| |||||| | || || || || | Sbjct 17267 GCAAGGAGGAGGTGCGCGCACGGGACATGTTCTACGCGCTCTGGATTCCGGATCTGTTCA 17326 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 || | ||||| ||| ||| | |||||| | | || || | || ||||||||| Sbjct 17327 TGCAGCGCGTGGAGGCGAACGAAACGTGGAGTTTGATGTGCCCGCACGACTGTCCCGGAT 17386 Query 94367 TGTCCGACGTTTGTGGATCGCGT--TTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG 94424 || |||| || |||| || || || | ||||| | | || || | |||| Sbjct 17387 TGGCCGA--TTCGTGGGGCGAAGAGTTCGAGAAGTTGTACACGGGCTATGAGAAGGAGGG 17444 Query 94425 CAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481 | || | |||| | || || |||| |||||| | |||| | || || Sbjct 17445 CCGCTTCATCCGCCAGGTAAAGGC-GC-AGGAT-CTGTGGTTTGCGATCATCGAATCCCA 17501 Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541 |||||||||||| || ||||| ||| ||||||| | ||| ||| |||||| Sbjct 17502 GGTGGAGACGGGCGTACCGTACATGCTGTACAAGGACGCGTGCAATCGCAAAAGCAACCA 17561 Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601 ||| || |||| |||||| |||| || || |||||||||||||| ||||| | || Sbjct 17562 GCAAAACATCGGCACCATCAAGTGCTCTAACCTTTGCACCGAGATTGTGGAGTACTCGTC 17621 Query 94602 TCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGA 94661 |||||| | || ||||| ||||||| ||| || || || ||||| | | Sbjct 17622 GAAGGACGAAGTGGCGGTGTGCAACCTGGCCTCGATTGCGTTGAACATGTTCGTCC---A 17678 Query 94662 TGCCTAC---ACGTCTACTGCTTCGTTCGAT-CTGGAGGAGCTTGTGAACTTCGCGGGAA 94717 || || |||| | | |||| ||| ||| | ||| | | || ||| | Sbjct 17679 GTCCGACCGTACGTATGAT--TTCG--CGAAGCTGAAAGAGGTAGCCAAAATCGTG---- 17730 Query 94718 GGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGG 94777 | | | ||| |||||| | | |||||| |||||||||||| || ||||| ||| Sbjct 17731 --ACGCGC---AACTTGAACAAGATTATCGACGTGAACTTCTACCCGGTGCCGGAAGCGA 17785 Query 94778 AGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGC 94837 || ||| ||| || || || || ||||| ||||||||||||||| | || || ||| Sbjct 17786 AGCGCTCGAACATGCGCCACCGTCCGATCGGTATCGGCGTCCAGGGTATGGCTGATGCGT 17845 Query 94838 TGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATAT 94897 | | ||||| | | || ||||| || || ||| | | ||| | | |||| Sbjct 17846 TCATCTTGATGGGCTTCCCGTACGAGAGTGCGGAGGCGCAGAAGCTCAATCAGCAGATAT 17905 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAA-CAATCCGTCCACTTGGCCAGATCGGACGGC 94956 | || | ||| || ||||| || || || | | | | | | ||||| ||| || Sbjct 17906 TTGAGACCATCTACTACGGTGCGCTGGAAGCTAGCTG-CGAGATGGCCGCCCAGGAGGGA 17964 Query 94957 GGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTC 95016 || |||| ||| | || || || || |||||||| | |||| |||| | Sbjct 17965 ---CCGTACGAGACGTACGAGGGGTCTCCGGTGAGCAAGGGCATTCTGCAGTACGACATG 18021 Query 95017 TGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCA 95074 ||| | || ||| |||| | |||| | ||| | | ||| | || Sbjct 18022 TGGAACAAGGTACCGACGGACCTGTGGAATTGGGCGACGCTGAAGGAAAAGAT--TGCCA 18079 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 ||||||||||| ||| | ||||| | || || ||||| ||||| || ||||| || | Sbjct 18080 AACACGGTGTGCGCAACTCACTGCTGCTCGCGCCGATGCCGACGGCTTCGACGGCACAAA 18139 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | | |||||||||||||||||||| || | || |||||||| |||||| |||| || | Sbjct 18140 TTTTGGGCAACAACGAGTCGTTCGAGCCGTATACGTCCAACGTTTACAACCGGCGCGTTC 18199 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 | | || || || | || | ||| | ||||| | ||| ||||| | | ||| Sbjct 18200 TGTCGGGCGAGTTTCAGGTGGTGAACCACCACCTGATCAAGGATCTGACCACGCACGGTC 18259 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 |||||| || | | |||||| | | || | ||||||||| ||||||||||| Sbjct 18260 TGTGGGACGATGATATGAAGAACACAATCCTGGCCCACAACGGCTCGATCCAGAACATCG 18319 Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363 |||||||||| |||| | | || ||||| || || |||||||| Sbjct 18320 AGCAAATACCGAAGGAAGTGCGCGATCTGTACAAAACGGTTTGGGAGAT 18368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494510685465400