Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq26551 114 2e-20 seq27055 96.9 4e-15 >seq26551 Length=145895 Score = 114 bits (126), Expect = 2e-20 Identities = 207/299 (69%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 10552 TGGCTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTC 10611 ||| | |||| || |||||||| | || | | || | ||| ||| || || ||| Sbjct 15829 TGGATAGTGATCAACTATCGCGAGGCGTACAATATGTTCGCCTGCAACGGGATCCTGTTC 15770 Query 10612 AACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTA 10669 ||||||||||||||||| || || | |||| ||||| ||||||| ||| | ||| Sbjct 15769 AACCACGAGTCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATCACCCGCTCGGTG 15710 Query 10670 TCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGA 10729 | || | || | ||| || ||||| | | || |||| || ||| | | || Sbjct 15709 GCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATCTCGATTCGAAGC 15652 Query 10730 GGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAG 10789 | |||||||| |||||||| ||||| ||||| || |||||| | | | || || || Sbjct 15651 GCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGATGCAGCAGGAGC 15592 Query 10790 AGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 || |||| || | |||| |||||||||| || || ||||| || | ||||| || ||| Sbjct 15591 AGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTGAGTTTGTCGAG 15533 Score = 114 bits (126), Expect = 2e-20 Identities = 207/299 (69%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 10552 TGGCTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTC 10611 ||| | |||| || |||||||| | || | | || | ||| ||| || || ||| Sbjct 17195 TGGATAGTGATCAACTATCGCGAGGCGTACAATATGTTCGCCTGCAACGGGATCCTGTTC 17136 Query 10612 AACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTA 10669 ||||||||||||||||| || || | |||| ||||| ||||||| ||| | ||| Sbjct 17135 AACCACGAGTCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATCACCCGCTCGGTG 17076 Query 10670 TCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGA 10729 | || | || | ||| || ||||| | | || |||| || ||| | | || Sbjct 17075 GCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATCTCGATTCGAAGC 17018 Query 10730 GGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAG 10789 | |||||||| |||||||| ||||| ||||| || |||||| | | | || || || Sbjct 17017 GCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGATGCAGCAGGAGC 16958 Query 10790 AGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 10848 || |||| || | |||| |||||||||| || || ||||| || | ||||| || ||| Sbjct 16957 AGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTGAGTTTGTCGAG 16899 >seq27055 Length=447146 Score = 96.9 bits (106), Expect = 4e-15 Identities = 187/272 (69%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 175901 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 |||||||||||||||| || | ||| ||| |||||||| | | ||||| || || Sbjct 54173 GTGAAGATGTACCTCG---GACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAAC 54117 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 ||||| | || || |||||||| ||||| || | |||| | ||||| || Sbjct 54116 TGACCTCCCGGAAACAGCAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTC 54057 Query 176018 ACAATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACA 176074 || ||||| || | || || ||| ||||| |||||||| ||| | |||||||| Sbjct 54056 ACGATCGT---CGAGCAAAGTGACTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACC 54000 Query 176075 TACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATAC 176134 | |||||| |||||||||||||| ||| |||| || | |||||| | || Sbjct 53999 GAACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCATGTGAAC 53940 Query 176135 ATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 | ||||| | ||| ||||| |||||||| Sbjct 53939 AACACCTTCCGCTGGCCCGGCTTCAGGCCGTC 53908 Score = 96.9 bits (106), Expect = 4e-15 Identities = 187/272 (69%), Gaps = 12/272 (4%) Strand=Plus/Plus Query 175901 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 |||||||||||||||| || | ||| ||| |||||||| | | ||||| || || Sbjct 65608 GTGAAGATGTACCTCG---GACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAAC 65664 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 ||||| | || || |||||||| ||||| || | |||| | ||||| || Sbjct 65665 TGACCTCCCGGAAACAGCAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTC 65724 Query 176018 ACAATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACA 176074 || ||||| || | || || ||| ||||| |||||||| ||| | |||||||| Sbjct 65725 ACGATCGT---CGAGCAAAGTGACTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACC 65781 Query 176075 TACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATAC 176134 | |||||| |||||||||||||| ||| |||| || | |||||| | || Sbjct 65782 GAACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCATGTGAAC 65841 Query 176135 ATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 | ||||| | ||| ||||| |||||||| Sbjct 65842 AACACCTTCCGCTGGCCCGGCTTCAGGCCGTC 65873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613243660313400