Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2173 363 3e-95 seq2702 113 8e-20 >seq2173 Length=41539 Score = 363 bits (402), Expect = 3e-95 Identities = 893/1330 (67%), Gaps = 62/1330 (5%) Strand=Plus/Minus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||||| |||||| |||| || | ||| || || || || || || | || | ||||| Sbjct 18240 CTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAAAC 18181 Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| || || || ||||||| ||||||||| |||| ||| ||||| || || || Sbjct 18180 GTTGGACGTATACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGT 18121 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAG 213073 ||||| || || | ||| || ||| | ||| ||||| | | | || | || Sbjct 18120 CGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTCAG 18061 Query 213074 CTCTGCCCAGTCCCATCTGCCAGACAGGTCC-TCGT--CCTTCACGTTCCACATGTCAAA 213130 | ||||| | ||| ||||||| ||| |||| |||||||||||| | Sbjct 18060 CGTCGCCCAATTCCA---------CAGGTCCGTCGGTACCTT---GTTCCACATGTCGTA 18013 Query 213131 CTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTT 213190 ||||| ||||| |||||||| || |||| ||| | ||| || || | || Sbjct 18012 CTGCAGAATGCCCTTGCTCACCGGAGACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGC 17953 Query 213191 GGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTT 213250 ||||| ||||||| || | ||| ||| ||||||||||||| |||||||||| | || Sbjct 17952 GGCCATCTCGCAGCTAGCTTCCAGCGCACCGTAGTAGATGGTCTCAAATATCTGCTGATT 17893 Query 213251 GAGCTTCTTGGCCTCTGG------GGACGTGAAGGGCATCATCATGCGTTGGAACACATC 213304 |||||||| ||||| | | ||| |||| ||||| ||| ||| |||| Sbjct 17892 GAGCTTCTGCGCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATG------AACGCATC 17839 Query 213305 AGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCA 213361 ||||| |||||||| ||||| ||||| || | ||| | || ||| || ||| | Sbjct 17838 AGCCATACCCTGGACGCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCT-- 17781 Query 213362 CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTT 213421 ||| || ||||| ||||| |||||| |||||||| | |||||| || | | ||| Sbjct 17780 -TCCGGCACCGGGTAGAAGTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATTTT 17722 Query 213422 GGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGG 213481 || || | ||| | | || || | ||||| | || ||| || ||| Sbjct 17721 GGCTACCTCTTTCAGCTTCGCGAAATC--ATACGTA-CGGTCGGACTGGACGAACATGTT 17665 Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC---CTGAGAGTCTGTGTACTCCAT 213538 || || || |||||||||||| || ||||| || || || | |||||||| Sbjct 17664 CAACGCAATCGAGGCCAGGTTGCACACCGCCACTTCGTCCTTCGAC---GAGTACTCCAC 17608 Query 213539 GATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGC 213598 ||||||||||| ||||| ||| ||||||||| | ||| || ||||| | ||||| Sbjct 17607 AATCTCGGTGCAAAGGTTAGAGCACTTGATGGTGCCGATGTTTTGCTGGTT-GCTTTTGC 17549 Query 213599 GTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTA 213657 | | ||| | |||||||| |||||||| || || ||||| | |||||| | | | Sbjct 17548 GATTGCACGCGTCCTTGTACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGA 17489 Query 213658 TCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCG 213716 || ||| || | |||| ||||| ||| || ||| ||| | | | ||| Sbjct 17488 TCGCAAACCACAGAT-CCTGCGCCTTTACCTGGCGGATGA-AGCGGCCCTCCTT--CTCA 17433 Query 213717 TA--CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGACAG 213773 || | || ||| | || | ||| || | |||||| || | | ||| ||| |||||| Sbjct 17432 TAGCCCGT--GTACAACTTCTCGAACTCTTCGCCCCACGAATCGG-CCAATCCGGGACAG 17376 Query 213774 GA-TGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAGGT 213831 |||||| ||||| | ||||| || | || ||| || | |||||||||||| | Sbjct 17375 TCGTGCGGG-CACATCAAACTCCACGTTTCGTTCGCCTCC-ACGCGCTGCATGAACAGAT 17318 Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891 |||| | ||| |||||| ||||| ||||| | | | ||| ||| || | ||||| Sbjct 17317 CCGGAATCCAGAGCGCGTAGAACATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTGTTTT 17258 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 | |||||| | ||| ||||| | || ||||||||||||||| |||||||||||| | Sbjct 17257 TCTTCAGATCCAAAAACTCAAACACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAACG 17198 Query 213952 CGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008 | ||||||| | ||||||||||| || || || ||| ||||| | | ||||| Sbjct 17197 CACCCGGCCGCTTATTGCCGCCCTGATCGACGTACCGTGCCGTGTTGTTGTACACGCGCA 17138 Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068 | | || |||| |||||| || |||||| || || | || |||| || |||| Sbjct 17137 GCATCGGCACCAACCCGTTCGAAATTCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCCC 17078 Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128 | | | || | ||||| ||||||||||| |||||||||||| ||||| || Sbjct 17077 GGATGCAGTGCACGTTCAGCCCGATGCCACCGGCAGACTTGGAGATCAGTGCGCACTGCT 17018 Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCG 214188 ||| || || |||||| | |||||||| || | | | |||||| ||||| || Sbjct 17017 TCAGCGTGTCGTAGATGCCTTCGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACG 16958 Query 214189 AGAGCTGGGG 214198 | |||||||| Sbjct 16957 ACAGCTGGGG 16948 >seq2702 Length=120640 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| || ||||||||| || |||||| || || || ||||| ||||| Sbjct 114059 CTTCAGCTCCTTCACCTTGTCCTCCAGCTTCGAGATGCGCTCGAGCTTCCGCCGTCGGCA 114118 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| |||||||| || | ||| || || ||||||||| ||||| Sbjct 114119 CTTGGAGGCGGCCACCCGGTTCCGCAGCCGCTTCCGCTCGAGCTTGATGCGCTCCTGCGA 114178 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 114179 CTCCATGTCGATCGG 114193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931132648441600