Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8443 125 2e-23 seq4507 91.5 4e-13 >seq8443 Length=460621 Score = 125 bits (138), Expect = 2e-23 Identities = 186/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| |||||||| ||||||||| || ||||| ||| | || || ||||| ||| Sbjct 212133 TCCATGGCCTTGATTAGACGACGCTGGATGTAACCGGTTTCGGCCGTCTTGACAGCGGTA 212074 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || | ||| |||| |||||||| || |||||| | | ||| ||| ||| ||||| Sbjct 212073 TCGATCAAACCCTCACGGCCACCCATGGCGTGGAAGTAGAACTCGGTCGG-CGTCAGCCC 212015 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| ||||| | || ||||||||||||| |||||| | |||| |||| | || Sbjct 212014 GGCAAGGTAGGAGTTTTCCACGAAACCACGCGACTCGGGACCGTAGTCGTCCTTGATGAA 211955 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || ||||| || | || | ||| | ||||| ||||| || || ||||||||||| Sbjct 211954 ATGGGGCAGAGTGCGCTTGCGGAACCCGAACGGGATGCGCTTACCCTCGACGTTCTGCTG 211895 Query 302814 TCCCAGGCACGAAATCATCTG 302834 || | || | ||| | ||| Sbjct 211894 ACCGACACAAGCAATAACCTG 211874 Score = 125 bits (138), Expect = 2e-23 Identities = 186/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| |||||||| ||||||||| || ||||| ||| | || || ||||| ||| Sbjct 312813 TCCATGGCCTTGATTAGACGACGCTGGATGTAACCGGTTTCGGCCGTCTTGACAGCGGTA 312872 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || | ||| |||| |||||||| || |||||| | | ||| ||| ||| ||||| Sbjct 312873 TCGATCAAACCCTCACGGCCACCCATGGCGTGGAAGTAGAACTCGGTCGG-CGTCAGCCC 312931 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| ||||| | || ||||||||||||| |||||| | |||| |||| | || Sbjct 312932 GGCAAGGTAGGAGTTTTCCACGAAACCACGCGACTCGGGACCGTAGTCGTCCTTGATGAA 312991 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || ||||| || | || | ||| | ||||| ||||| || || ||||||||||| Sbjct 312992 ATGGGGCAGAGTGCGCTTGCGGAACCCGAACGGGATGCGCTTACCCTCGACGTTCTGCTG 313051 Query 302814 TCCCAGGCACGAAATCATCTG 302834 || | || | ||| | ||| Sbjct 313052 ACCGACACAAGCAATAACCTG 313072 >seq4507 Length=28812 Score = 91.5 bits (100), Expect = 4e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| |||||| |||||| |||||||| ||||| ||||| | |||||||| || Sbjct 16420 GCACCGTGCGAAATCTGACAATCGCGCTCCATCTCACCAAAACGCAACCCACCATCACGC 16479 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | |||||| ||||| || |||| | || || ||| | || ||| Sbjct 16480 GCACGACCCTCCATCGGCTGGCGGACGAGAATCTGCACCGGGCCGCGCGCACGCGAATGG 16539 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 |||||| | ||||| ||||| |||||||||||| | | || |||| ||||| Sbjct 16540 ATCTTATCGTCCACCATGTGCTTCAGACGCTGGTAGTAGGTCGGGCCGAGGAAGA 16594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471169556411005