Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2173 221 1e-52 >seq2173 Length=41539 Score = 221 bits (244), Expect = 1e-52 Identities = 1055/1648 (64%), Gaps = 49/1648 (3%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || ||||| ||||| || || ||||| ||| ||||| ||||||||||| |||||||| Sbjct 18572 TTGTCGACCGTGAACTGGATCGCATTTACGGCGGGCTTCGTGCGCAAATAGTACATGCCA 18513 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGA--TGCTGC-ACATT-GTTTG--GTAA 130519 || || || || || || ||| ||||| ||| | || | | ||| ||| Sbjct 18512 GTCTTCAGGCCCATCTT----CCACGC--GTGGAAGTGCATCGACGTCAGCTTGCCGTAG 18459 Query 130520 TTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579 || |||| ||||||| ||||||| ||| ||||| || || || || || |||| ||| Sbjct 18458 TTCGGTTCCGCCACGTGGATGTTGAACGACTGCGACTGGTCGATGAACGCACCCCGGTCG 18399 Query 130580 GCAGCCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCT 130638 || ||||| | || ||| | ||| | ||||||||| | || ||||| ||||| | Sbjct 18398 GCTGCCATCTGGATGCACGTTTTCACCGAA-ATCTCCCAAACCGTTTTGTACAGATCGCG 18340 Query 130639 AATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTT 130698 | | || ||||| || | || || | ||||||| ||| | ||| ||| Sbjct 18339 CACTTCCTTCGGTATTTGCTCGATGTTCTGGATCGAGCCGTTGTGGGCCAGGATTGTGTT 18280 Query 130699 GCGCATACTTTTATCGT---ACAATCCAAGC-TGTACAAGATCTTTTACCAAATGATTAT 130754 |||| | ||||| ||| || || || || |||| || | || || | | Sbjct 18279 CTTCATA---TCATCGTCCCACAGACCGTGCGTGGTCA-GATCCTTGATCAGGTGGTGGT 18224 Query 130755 TAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTT 130814 | | | ||||| || || | ||| ||||| | ||||| |||| ||| |||| | Sbjct 18223 TCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAAACGTTGGACGTATACGGCT 18164 Query 130815 CAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTA 130874 | || || ||||||||||| || |||||||| || | || || ||||| || | | Sbjct 18163 CGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGTCGGCATCGGCGCGAGCA 18104 Query 130875 ATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATA 130934 || || || || | |||||| | | || ||| ||||| |||||| ||| | Sbjct 18103 GCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTCAGCGTCGCCCAATTCCACA 18044 Query 130935 GAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGAC 130994 | || ||| || ||||||||||| || | || || ||||| || || | ||| Sbjct 18043 GGTCCGTCGGT---ACCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTCACCGGAG 17987 Query 130995 TGGATTCGAACGATTCGTA-GATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAA 131053 ||| ||| ||||| | | ||| | || |||| ||| ||||||||||| Sbjct 17986 ACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGCG-GCCATCTCGCAGCTAGCTTCCAGC 17928 Query 131054 GCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCG 131113 || ||||| || ||||| || || || | ||| | | | ||| | |||||| Sbjct 17927 GCACCGTAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTCTGCGCCTCCGCACTCTCG 17868 Query 131114 TAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGT 131173 || || || ||| || || || || || || | |||||| | || | || | ||| Sbjct 17867 TACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGACGCCGATACCGATCGGA 17808 Query 131174 CTATGTTTTAAATTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTA 131231 | || | || | || | | ||| || || | ||| | ||| || | Sbjct 17807 CGGTGGCGCATGTTCGAGCGCTTCG--CTTCCGGCACCGGGTAGAAGTTCACGTCGATAA 17750 Query 131232 TTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACG 131291 | ||||| || |||||| || |||| | || ||||| || |||||||| ||| Sbjct 17749 TCTTGTTCAAGTTGCGCGTCACGATTTTGGCTACCTCTTTCAGCTTCGCGAAATCATACG 17690 Query 131292 TGCCAGTTTCGAGGTTTAC-AAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350 | | ||| | || || || | || || || || ||||| || || || ||| Sbjct 17689 T---ACGGTCGGACTGGACGAACATGTTCAACGCA-ATCGAGGCCAGGTTGCACACCGCC 17634 Query 131351 GTTTCGTCATAATCG--CAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGG 131408 |||||| | ||| | |||| ||||| |||| ||| | ||| || ||| |||| Sbjct 17633 ACTTCGTCCT--TCGACGAGTACTCCACAATCTCGGTGCAAAGGTTAGAGCACTTGATGG 17576 Query 131409 TGCCCAAATTTTGTTGATTGCTTTTAGCATT-CACATGGTCCTTGTACATCATGTAGGGC 131467 |||| | ||||| || |||||||| ||| ||| ||||||||||| |||||| || Sbjct 17575 TGCCGATGTTTTGCTGGTTGCTTTTGCGATTGCAC-GCGTCCTTGTACAGCATGTACGGT 17517 Query 131468 GTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATT 131525 |||||| || || || | ||| || | | | || | || | | || | | Sbjct 17516 ACGCCCGTCTCCACCTGGGATTCGATGA--TCGCAAACCACAGATCCTGCGCCTTTACCT 17459 Query 131526 GATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAA 131585 | || | |||| || || || ||||||| | || || | || ||| Sbjct 17458 GGCGGATGAAGCGGCCCTCCTTCTCATAGCCCGTGTACAACTTCTCGAACTCTTCGCCCC 17399 Query 131586 ACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTT 131645 ||||| | |||| |||||| ||| || ||||| | |||| ||||| | Sbjct 17398 ACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCACGTTTCGTTCGCCT 17339 Query 131646 CAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTT 131705 | || |||| ||| |||| |||||| | ||| | |||||| |||| || | || Sbjct 17338 CCACGCGCTGCATGAACAGATCCGGAATCCAGAGCGCGTAGAACATGTCCCGTGCGCGCA 17279 Query 131706 TCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGG 131765 ||| || | || | |||| |||| || ||||| || || | || | ||||| | Sbjct 17278 CCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAAAAACTCAAACACATCGCCGTGCCACG 17219 Query 131766 GTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAA 131822 | |||| || | || | || || |||||| ||||| |||| || | || Sbjct 17218 GCTCCAGGTAGATGGCAAACGCACCCGGCCGCTTATTGCCGCCCTGATCGACGTACCGTG 17159 Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882 || |||||||||| ||||||| ||| ||| |||| ||||| | |||| || |||| Sbjct 17158 CCGTGTTGTTGTACACGCGCAGCATCGGCACCAACCCGTTCGAAATTCCGTTCGTGCCGG 17099 Query 131883 TAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATT 131942 ||||| | || || || | ||| ||| ||||| || || || || ||| | | | Sbjct 17098 AGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCAGCCCGATGCCACCGGCAGACT 17039 Query 131943 TAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAA 132002 | ||||| |||||||| | | || |||| ||||| ||||| | |||||| ||| | Sbjct 17038 TGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCTTCGATGCTGTCGTCGGACA 16979 Query 132003 TGTCGACTAAAAAGCAAGAGGACAACTG 132030 || | | ||||||||| |||| ||| Sbjct 16978 TGGTCAGCAGAAAGCAAGACGACAGCTG 16951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424756427513880