Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14]
34,365 sequences; 326,465,827 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq26551 105 8e-18
seq27055 100 4e-16
>seq26551
Length=145895
Score = 105 bits (116), Expect = 8e-18
Identities = 176/251 (70%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 11961 GGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 12020
|| || || |||||||||||||||||||| || || | |||| ||||| ||||||
Sbjct 15781 GGGATCCTGTTCAACCACGAGTCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATC 15722
Query 12021 A-CCGAT-GGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078
| ||| | ||| | || | || | ||| || ||||| | | || |||| || |
Sbjct 15721 ACCCGCTCGGTGGCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATC 15664
Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138
|| | | || | |||||||| || ||||| ||||| ||||| || |||||| | |
Sbjct 15663 TCGATTCGAAGCGCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGA 15604
Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198
| || || || || |||| || | |||| |||||||||| || || ||||| || | |
Sbjct 15603 TGCAGCAGGAGCAGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTG 15544
Query 12199 AGTTCGTTGAG 12209
|||| || |||
Sbjct 15543 AGTTTGTCGAG 15533
Score = 105 bits (116), Expect = 8e-18
Identities = 176/251 (70%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 11961 GGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 12020
|| || || |||||||||||||||||||| || || | |||| ||||| ||||||
Sbjct 17147 GGGATCCTGTTCAACCACGAGTCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATC 17088
Query 12021 A-CCGAT-GGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078
| ||| | ||| | || | || | ||| || ||||| | | || |||| || |
Sbjct 17087 ACCCGCTCGGTGGCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATC 17030
Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138
|| | | || | |||||||| || ||||| ||||| ||||| || |||||| | |
Sbjct 17029 TCGATTCGAAGCGCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGA 16970
Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198
| || || || || |||| || | |||| |||||||||| || || ||||| || | |
Sbjct 16969 TGCAGCAGGAGCAGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTG 16910
Query 12199 AGTTCGTTGAG 12209
|||| || |||
Sbjct 16909 AGTTTGTCGAG 16899
>seq27055
Length=447146
Score = 100 bits (110), Expect = 4e-16
Identities = 201/294 (68%), Gaps = 12/294 (4%)
Strand=Plus/Minus
Query 179038 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 179094
|||||||||||||||| || | ||| ||| |||||||| | | ||||| || ||
Sbjct 54173 GTGAAGATGTACCTCG---GACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAAC 54117
Query 179095 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 179154
||||| | || || |||||||| ||||| ||| | ||||| | |||| ||
Sbjct 54116 TGACCTCCCGGAAACAGCAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTC 54057
Query 179155 ACAATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACA 179211
|| ||||| || | || || ||| ||||| ||||| || ||| | ||||||||
Sbjct 54056 ACGATCGT---CGAGCAAAGTGACTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACC 54000
Query 179212 TATGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATAC 179271
| |||||| |||||||||||||| ||| |||| || | |||||| | ||
Sbjct 53999 GAACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCATGTGAAC 53940
Query 179272 ATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325
| |||||| | || ||||| |||||||| |||| || ||| || |||
Sbjct 53939 AACACCTTCCGCTGGCCCGGCTTCAGGCCGTCCAGCATGGACGGGATCGACCGC 53886
Score = 100 bits (110), Expect = 4e-16
Identities = 201/294 (68%), Gaps = 12/294 (4%)
Strand=Plus/Plus
Query 179038 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 179094
|||||||||||||||| || | ||| ||| |||||||| | | ||||| || ||
Sbjct 65608 GTGAAGATGTACCTCG---GACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAAC 65664
Query 179095 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 179154
||||| | || || |||||||| ||||| ||| | ||||| | |||| ||
Sbjct 65665 TGACCTCCCGGAAACAGCAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTC 65724
Query 179155 ACAATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACA 179211
|| ||||| || | || || ||| ||||| ||||| || ||| | ||||||||
Sbjct 65725 ACGATCGT---CGAGCAAAGTGACTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACC 65781
Query 179212 TATGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATAC 179271
| |||||| |||||||||||||| ||| |||| || | |||||| | ||
Sbjct 65782 GAACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCATGTGAAC 65841
Query 179272 ATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325
| |||||| | || ||||| |||||||| |||| || ||| || |||
Sbjct 65842 AACACCTTCCGCTGGCCCGGCTTCAGGCCGTCCAGCATGGACGGGATCGACCGC 65895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618169543429400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |