Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq26551 105 8e-18 seq27055 100 4e-16 >seq26551 Length=145895 Score = 105 bits (116), Expect = 8e-18 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 11961 GGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 12020 || || || |||||||||||||||||||| || || | |||| ||||| |||||| Sbjct 15781 GGGATCCTGTTCAACCACGAGTCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATC 15722 Query 12021 A-CCGAT-GGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078 | ||| | ||| | || | || | ||| || ||||| | | || |||| || | Sbjct 15721 ACCCGCTCGGTGGCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATC 15664 Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138 || | | || | |||||||| || ||||| ||||| ||||| || |||||| | | Sbjct 15663 TCGATTCGAAGCGCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGA 15604 Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198 | || || || || |||| || | |||| |||||||||| || || ||||| || | | Sbjct 15603 TGCAGCAGGAGCAGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTG 15544 Query 12199 AGTTCGTTGAG 12209 |||| || ||| Sbjct 15543 AGTTTGTCGAG 15533 Score = 105 bits (116), Expect = 8e-18 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 11961 GGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 12020 || || || |||||||||||||||||||| || || | |||| ||||| |||||| Sbjct 17147 GGGATCCTGTTCAACCACGAGTCACCCCGGCGGGGTGAGAATTTTGTGACGCGCAAGATC 17088 Query 12021 A-CCGAT-GGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078 | ||| | ||| | || | || | ||| || ||||| | | || |||| || | Sbjct 17087 ACCCGCTCGGTGGCGAAGATTTC--GCTCGGTCAGCAGGAGTGCGTCGAGCTGGGTAATC 17030 Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138 || | | || | |||||||| || ||||| ||||| ||||| || |||||| | | Sbjct 17029 TCGATTCGAAGCGCGACTGGGGCCACGCCAAAGACTACGTTGAGGCGATGTGGTTGATGA 16970 Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198 | || || || || |||| || | |||| |||||||||| || || ||||| || | | Sbjct 16969 TGCAGCAGGAGCAGCCGGAAGATTTTGTCATCGCGACGGGCGAAACGCACTCGGTGCGTG 16910 Query 12199 AGTTCGTTGAG 12209 |||| || ||| Sbjct 16909 AGTTTGTCGAG 16899 >seq27055 Length=447146 Score = 100 bits (110), Expect = 4e-16 Identities = 201/294 (68%), Gaps = 12/294 (4%) Strand=Plus/Minus Query 179038 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 179094 |||||||||||||||| || | ||| ||| |||||||| | | ||||| || || Sbjct 54173 GTGAAGATGTACCTCG---GACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAAC 54117 Query 179095 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 179154 ||||| | || || |||||||| ||||| ||| | ||||| | |||| || Sbjct 54116 TGACCTCCCGGAAACAGCAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTC 54057 Query 179155 ACAATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACA 179211 || ||||| || | || || ||| ||||| ||||| || ||| | |||||||| Sbjct 54056 ACGATCGT---CGAGCAAAGTGACTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACC 54000 Query 179212 TATGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATAC 179271 | |||||| |||||||||||||| ||| |||| || | |||||| | || Sbjct 53999 GAACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCATGTGAAC 53940 Query 179272 ATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325 | |||||| | || ||||| |||||||| |||| || ||| || ||| Sbjct 53939 AACACCTTCCGCTGGCCCGGCTTCAGGCCGTCCAGCATGGACGGGATCGACCGC 53886 Score = 100 bits (110), Expect = 4e-16 Identities = 201/294 (68%), Gaps = 12/294 (4%) Strand=Plus/Plus Query 179038 GTGAAGATGTACCTCGTTTGA--GACGC-ATCTTTGCCACCCATGAGACGCGTCCCAAAT 179094 |||||||||||||||| || | ||| ||| |||||||| | | ||||| || || Sbjct 65608 GTGAAGATGTACCTCG---GACTGGCGCTATCCTTGCCACCGGTCAACCGCGTACCGAAC 65664 Query 179095 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 179154 ||||| | || || |||||||| ||||| ||| | ||||| | |||| || Sbjct 65665 TGACCTCCCGGAAACAGCAGATTGATGTTGTTGCTACCGACGTAGTTCTGCGCCAGGTTC 65724 Query 179155 ACAATCGTATCCGCG---AGGGAGACTTCACCGTGATGGTAAGCCGACTTGTCCGCCACA 179211 || ||||| || | || || ||| ||||| ||||| || ||| | |||||||| Sbjct 65725 ACGATCGT---CGAGCAAAGTGACTGTTCGCCGTGGTGGTAGGCGGACATTTCCGCCACC 65781 Query 179212 TATGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATAC 179271 | |||||| |||||||||||||| ||| |||| || | |||||| | || Sbjct 65782 GAACCCGCCAGCTGCGCCACCTTCACCTCTCGCTTGTCATTACGCTTGAAGCATGTGAAC 65841 Query 179272 ATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 179325 | |||||| | || ||||| |||||||| |||| || ||| || ||| Sbjct 65842 AACACCTTCCGCTGGCCCGGCTTCAGGCCGTCCAGCATGGACGGGATCGACCGC 65895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618169543429400