Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2173 453 1e-122 >seq2173 Length=41539 Score = 453 bits (502), Expect = 1e-122 Identities = 1172/1758 (67%), Gaps = 66/1758 (4%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || ||||||||||||||||| ||||| || ||| ||||||| ||| | |||||| | Sbjct 18533 GTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAGTGCATCGAC 18474 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | ||||||| | |||| | | ||| | |||||||| |||||| |||||||||||| Sbjct 18473 GTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGACTGGTCGATG 18414 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 ||||||| |||||||| ||||| | |||| || || || ||||||||| | || Sbjct 18413 AACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCCCAAACCGTT 18354 Query 78370 CGGTAAA--TGGC-------CTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCA 78420 ||| | | || |||| | || || ||||| | | | || || Sbjct 18353 TTGTACAGATCGCGCACTTCCTTCGGTATTTGCTCGATGTTCTG-----GATCGAGCCGT 18299 Query 78421 CCGGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCC 78480 | | || ||| ||||| || | | || ||| || | | | |||||| Sbjct 18298 TGTGGGC-CAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTCAGATCC 18240 Query 78481 CGGACCAGGTGCCGGTTAATCA--TGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGA 78538 || |||||| |||| | || ||| |||||||| | ||| || || ||| | Sbjct 18239 TTGATCAGGTGGTGGTTCACCACCTGA--AACTCGCCCGACAGAACGCGCCGGTTGTAAA 18182 Query 78539 TGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGG 78598 ||||| ||| ||||||||||| | ||||||||| |||| || || || ||||| || | Sbjct 18181 CGTTGGACGTATACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCG 18122 Query 78599 TCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTA 78658 ||||||| || |||| ||| || || || || | ||| || | |||| |||| | Sbjct 18121 TCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTCA 18062 Query 78659 GGCCGTCCCAAAATTCATTCG--CCG-CGATCCC-----CCACATGTCCGGTTGAAGGAT 78710 | |||| | ||||| | ||| || | || ||||||||| || || || Sbjct 18061 G--CGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAAT 18004 Query 78711 ACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTC 78770 |||| | | |||| ||||||| | |||||||||| | |||||||| ||| | || Sbjct 18003 GCCCTTGCTCACCGGAGACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGCGGCCATCTC 17944 Query 78771 GCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCG 78830 ||| | ||| || ||| ||| | | ||| || || || ||||||| | Sbjct 17943 GCAGCTAGCTTCCAGCGCACCGTAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTCTG 17884 Query 78831 CGCCTTGGT-CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGA 78889 ||||| | ||| ||| ||| | ||| | || ||||| |||| |||| ||||||| Sbjct 17883 CGCCTCCGCACTC-TCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGA 17825 Query 78890 CGCCGATAGCGATCGGTCGGTGGCGCATGTT---GCTCTTTCGGGCCGCCTCGGTCGGGT 78946 |||||||| ||||||| |||||||||||||| || ||| ||| | | ||||| Sbjct 17824 CGCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCAC---CGGGT 17768 Query 78947 AAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACA 79006 | |||||| ||||| | ||||| ||| ||||| |||| | ||||| | || Sbjct 17767 AGAAGTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATTTTGGCTACCTCTTTCA 17708 Query 79007 ATTTGGCGAAATCAAA---ATGATTTCCTTTGATGAAAGTCGGT--AGGCACAGCGATGC 79061 || ||||||||| | | | | | || ||| | | | | ||| | ||| || Sbjct 17707 GCTTCGCGAAATCATACGTACGGTCGGACTGGACGAACAT-GTTCAACGCA-ATCGAGGC 17650 Query 79062 CAGGTTGCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGCACAAA 79119 |||||||||||| ||| |||||| | | || | ||| | || || ||||| | Sbjct 17649 CAGGTTGCACACCGCCACTTCGTCCTTCGACGAGTA--CTCCACAATCTCGGTGCAAAGG 17592 Query 79120 TTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTG 79179 ||||| ||||||||||||||||||| | ||||||||| || || || ||||||||| Sbjct 17591 TTAGAGCACTTGATGGTGCCGATGTTTTGCTGGTTGCTTTTGCGATTGCACGCGTCCTTG 17532 Query 79180 TAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAACGCCGTCC-CAGATGT 79237 || ||||||||| || ||||| ||||| | || || ||| || ||||| Sbjct 17531 TACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGAT-- 17474 Query 79238 CCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCG-GTACAACTCG 79296 || | ||| || || | || |||| | || | ||| |||||||| Sbjct 17473 CCTGCGCCTTTACCTGGCGGATGAAGCGGCCCTCCTTCTCATA-GCCCGTGTACAACTTC 17415 Query 79297 TTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGC 79356 | ||| | || || | ||||| || || || || |||||||||||||||| | Sbjct 17414 TCGAACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTC 17355 Query 79357 CAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 || |||| | ||| || || |||||| || ||||| ||||| || || ||| Sbjct 17354 CACGTTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGAATCCAGAGCGCGTAGAAC 17295 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 | ||| || |||| |||||| | ||| ||| ||| || | ||| || | Sbjct 17294 ATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAAAAACTCAAAC 17235 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 | ||| |||||||||||||||| |||||||| |||| |||| ||||| ||||||| Sbjct 17234 ACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCCGGCCGCTTATTGCCGCCC 17175 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 || | ||||||||| |||||||||||| | || || ||||| ||||| | |||| | Sbjct 17174 TGATCGACGTACCGTGCCGTGTTGTTGTACACGCGCAGCATCGGCACCAACCCGTTCGAA 17115 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCC 79655 | |||||||| ||| ||| || || ||||||| ||| | ||| || | || Sbjct 17114 ATTCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCCCGGATG-CAGTGCACGTTCAGCCC 17056 Query 79656 GATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTC 79715 |||||| |||| |||||||||| | ||||||| ||| ||||| ||||||||||| || Sbjct 17055 GATGCCACCGGCAGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCTTC 16996 Query 79716 GATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACC 79775 ||| |||||| ||| | | ||| ||||| ||||| ||| || | |||| | Sbjct 16995 GATGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTAGC 16936 Query 79776 GGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTC----ATCAGATCG 79830 || ||| | |||||||| || || || ||| ||| |||| | ||||| Sbjct 16935 CGCCGCGAACATGGTCGGCGAGGCATGGGTAAAGTAAC-----GCTCCGAGAGCAGATTA 16881 Query 79831 TACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAG 79890 |||||||| | | | || ||| ||| |||||||||| ||||||||||| | Sbjct 16880 TACGTCTCGATCGCAGCCTCGATGTCCGTGCCATGGATGCCGATGGCGACGCGCATCAGC 16821 Query 79891 AGGTACTGGGGCGTCTCG 79908 | | ||| ||| ||||| Sbjct 16820 ATATGCTGCGGCCTCTCG 16803 Score = 383 bits (424), Expect = 2e-101 Identities = 1157/1752 (66%), Gaps = 56/1752 (3%) Strand=Plus/Plus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| ||| ||| | | | ||||| ||||| |||||||||||||| ||| || | Sbjct 16804 GAGAGGCCGCAGCATATGCTGATGCGCGTCGCCATCGGCATCCATGGCACGGACATC--G 16861 Query 19157 CGAGTCCG--CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGA 19214 | | || |||||| || | ||| | || | ||| || || || |||||| Sbjct 16862 AGGCTGCGATCGAGACGTATAATCTGCTCTCGGAGCGTTACTTTACCCATGCCTCGCCGA 16921 Query 19215 CCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGA 19274 || | ||| || | |||| | || ||| ||||| || || || || | ||| Sbjct 16922 CCATGTTCGCGGCGGCTACGCAGCGTCCCCAGCTGTCGTCTTGCTTTCTGCTGACCATGT 16981 Query 19275 AGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGT 19334 || |||||||| || ||||||||||| ||||| ||| ||||||| | |||||||||| Sbjct 16982 CCGACGACAGCATCGAAGGCATCTACGACACGCTGAAGCAGTGCGCACTGATCTCCAAGT 17041 Query 19335 GGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAAT 19393 |||| || |||||| | || ||| | |||||| ||| || || ||| Sbjct 17042 CTGCCGGTGGCATCGGGCTGAACGTGCACTGC-ATCCGGGCGAAGGGAACGTACATCTCC 17100 Query 19394 GGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCC 19453 || ||||||||| | | |||| | || || ||||| ||||| | |||||||||||| Sbjct 17101 GGCACGAACGGAATTTCGAACGGGTTGGTGCCGATGCTGCGCGTGTACAACAACACGGCA 17160 Query 19454 AGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCA 19513 |||||||| | ||||| ||| || || ||| |||| ||||||||||| ||||| Sbjct 17161 CGGTACGTCGATCAGGGCGGCAATAAGCGGCCGGGTGCGTTTGCCATCTACCTGGAGCCG 17220 Query 19514 TGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATG 19573 ||||||| || || | || || | || ||| ||| || | |||||| || Sbjct 17221 TGGCACGGCGATGTGTTTGAGTTTTTGGATCTGAAGAAAAACACCGGCAAGGAGGAGGTG 17280 Query 19574 CGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAG 19633 ||| || ||| | ||| || | ||||||||||| || |||||| || || ||| Sbjct 17281 CGCGCACGGGACATGTTCTACGCGCTCTGGATTCCGGATCTGTTCATGCAGCGCGTGGAG 17340 Query 19634 AAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTAC 19693 | ||||| ||| |||||||||||||||| || || || | |||| | Sbjct 17341 GCGAACGAAACGTGGAGTTTGATGTGCCCGCACGACTGTCCCGGATTGGCCGATTCGTGG 17400 Query 19694 GGCGAGGCGTTCAATGAGTTGTAC-CGGACT-TACGTAGCCCAGGGCCGGTTCAAGAAGG 19751 ||||| | |||| | |||||||| ||| || | | || ||||||| |||| Sbjct 17401 GGCGAAGAGTTCGAGAAGTTGTACACGGGCTATGAGAAG--GAGGGCCGCTTCATCCGCC 17458 Query 19752 TGGTCCGGGCCCGGGACGTCTG-GGACCGCG-TCCTCAAAAGCCAGGTCGAGACCGGCAC 19809 ||| ||| | ||| |||| || ||| || || || |||||| ||||| ||| Sbjct 17459 AGGTAAAGGCGCAGGA--TCTGTGGTTTGCGATCATCGAATCCCAGGTGGAGACGGGCGT 17516 Query 19810 ACCGTACATGTGCTACAAGGACGC-CGCGAACGCCAAGTCAAATCAGAAGAACATCGGCG 19868 |||||||||| ||||||||||| || | ||| || | || ||| | ||||||||| Sbjct 17517 ACCGTACATGCTGTACAAGGACGCGTGCAATCGCAAAAGC-AACCAGCAAAACATCGGCA 17575 Query 19869 CGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTG 19928 | ||||||| || ||||| || || || || ||||| || | |||||| | Sbjct 17576 CCATCAAGTGCTCTAACCTTTGCACCGAGATTGTGGAGTACTCGTCGAAGGACGAAGTGG 17635 Query 19929 CCGTGTGTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCTCC---TCCTTC 19984 | ||||| || ||||| || | ||| || | |||||| || || | | | Sbjct 17636 CGGTGTGCAACCTGGCCTCGAT-TGCGTTGAACATGTTCGTCCAGTCCGACCGTACGTAT 17694 Query 19985 GACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATC 20044 || || || || || | ||||| || |||| ||||| || |||| | ||| Sbjct 17695 GATTTCGCGAAGCTGAAAGAGGTAGCCAAAATCGTGACGCGCAACTTGAACAAGATTATC 17754 Query 20045 GATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCG 20101 || |||||| ||||| | | || ||| |||| ||||| ||||||||||| ||| Sbjct 17755 GACGTGAACTTCTACCCGGTGCCGGAAGCGAAGCGC---TCGAACATGCGCCACCGTCCG 17811 Query 20102 ATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGAC 20161 |||| |||||||||||||| |||| || | ||||| || | ||| || | | ||| Sbjct 17812 ATCGGTATCGGCGTCCAGGGTATGGCTGATGCGTTCATCTTGATGGGCTTCCCGTACGAG 17871 Query 20162 GATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTC 20221 | | |||||| ||||||| || || || ||| || | ||| ||| || Sbjct 17872 AGTGCGGAGGCGCAGAAGCTCAATCAGCAGATATTTGAGACCATCTACTACGGTGC---G 17928 Query 20222 CTGGAATC---GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCG 20278 |||||| | ||||| | ||| |||| || ||||||||||||| | ||||||| Sbjct 17929 CTGGAAGCTAGCTGCGAGATGGCCGCCCAGGAGGGACCGTACGAGACGTACGAGGGGTCT 17988 Query 20279 CCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGC--GTCACTGA--GA-ATGAGT 20333 || | | | |||| || || ||| ||||||||| | | || || || || | Sbjct 17989 CCGGTGAGCAAGGGCATTCTGCAGTACGACATGTGGAACAAGGTACCGACGGACCTGTGG 18048 Query 20334 TTTGGAGCG-CCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTC 20392 | | ||| | || |||| |||| | ||||| | |||||||| |||| || Sbjct 18049 AATTGGGCGACGCTGAAGGAAAAGATTGCCAAACACGGTGTGCGCAACTCACTGCTGCTC 18108 Query 20393 GCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCG 20452 ||||| |||||||| || ||||| || || || |||| ||||||||| | ||||||||| Sbjct 18109 GCGCCGATGCCGACGGCTTCGACGGCACAAATTTTGGGCAACAACGAGTCGTTCGAGCCG 18168 Query 20453 TACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCA--TGGTAAACA 20510 || ||| ||||| | ||| || || ||| | || ||||| ||| |||| ||| Sbjct 18169 TATACGTCCAACGTTTACAACCGGCGCGTTCTGTCGGGCGAGTT--TCAGGTGGTGAACC 18226 Query 20511 AGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCA--AAATTAAGAATGA 20568 | |||||| || || || | | || | ||||| | | | | || ||||| Sbjct 18227 ACCACCTGATCAAGGATCTGACCACGCACGGTCTGTGG--GACGATGATATGAAGAACAC 18284 Query 20569 AAT--TGTCCGA-GCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAA 20622 ||| || || | |||| || ||||| ||| | | || || || | | Sbjct 18285 AATCCTGGCCCACAACGGCTCGA---TCCAGAACATCGAGCAAATACCGAAGGAAGTGCG 18341 Query 20623 GGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGA 20682 || | |||| || || ||||| || | ||| | |||| | ||||| ||||| Sbjct 18342 CGATCTGTACAAAACGGTTTGGGAGATTTCGGTGAAAACGTGCATCCAGATGGCAGCCGA 18401 Query 20683 TCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCT 20742 || || || | |||||||||||| |||||| |||| || | ||| | | |||| | Sbjct 18402 CCGGGGTGCGTTCATCGACCAGTCGCAGTCGTTCAACATCCACGTGGCGGAACCGAACTA 18461 Query 20743 GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTA 20802 | ||||||| || ||||| | ||| ||| | | ||| || ||||| |||||||| Sbjct 18462 CGGCAAGCTGACGTCGATGCACTTCCACGCGTGGAAGATGGGCCTGAAGACTGGCATGTA 18521 Query 20803 CTATCTGCGGAC 20814 |||| |||| || Sbjct 18522 CTATTTGCGCAC 18533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548289174315600