Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2173 196 5e-45 seq27055 129 7e-25 >seq2173 Length=41539 Score = 196 bits (216), Expect = 5e-45 Identities = 1004/1570 (64%), Gaps = 56/1570 (4%) Strand=Plus/Minus Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096 ||| |||| |||||||||||| ||||| |||||| ||||||| ||| | |||||| || Sbjct 18534 CGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAGTGCATCGA 18475 Query 80097 ACTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155 | ||||| | ||| | || | | ||| | |||||| | ||||| ||||| || Sbjct 18474 CGTCAGCTTGCCGTAGT-TCGGTTCCGCCACGTGGATGTTGAACGACTGCGACTGGTCGA 18416 Query 80156 TGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTG 80215 |||| || || || || || ||||| | || | || | ||| ||||| || | Sbjct 18415 TGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCCCAAACCG 18356 Query 80216 TACGATACACCTTACGAAGCTCCTCTGGAATGTCCA-GATTTT--GCACACTGCCACCGT 80272 | |||| | || | |||| || || | | ||| || | | ||| || Sbjct 18355 TTTTGTACAGATCGCGCACTTCCTTCGGTATTTGCTCGATGTTCTGGATCGAGCCGTTGT 18296 Query 80273 CCTTTACAATTTGATTTTTCAATTCAGACGTCC-AGACACCAAGCTTGTGCAGATCTTTC 80331 | ||| || |||| ||| ||||| | | ||| || || |||||| || Sbjct 18295 GGGCCAGGATTGTGTTCTTCATATCAT-CGTCCCACAGACCGTGCGTGGTCAGATCCTTG 18237 Query 80332 ACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTT 80391 | ||||| | ||| | || |||||| |||| || ||| || || | ||| Sbjct 18236 ATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAAACGTTG 18177 Query 80392 GTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGC 80451 | || || ||||| || | ||||||||| || | || || ||||| ||||||||| Sbjct 18176 GACGTATACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGTCGGC 18117 Query 80452 ATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCT 80511 ||||| ||| || |||||| || |||| ||||| || || | || || Sbjct 18116 ATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTCAGCGTC 18057 Query 80512 GACCAAAAATCAACCCCAACGCTGTGACC-----CCACATGTCGTGCTGCAAGATGCCCT 80566 | |||| || || || | ||| ||||||||||| ||||| ||||||| Sbjct 18056 GCCCAAT--TCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAATGCCCT 17999 Query 80567 CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA-C 80625 | ||||||||||| || ||||||||||||| |||||| ||||| ||| || | Sbjct 17998 TGCTCACCGGAGACCCCTCGTACGTCTCGTACGGTCCCTCCTGGGCGGCCATCTCGCAGC 17939 Query 80626 GA-CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGC 80684 | || | || || ||| || ||| |||||| | || || | |||| Sbjct 17938 TAGCTTCC--AGCGCACCGTAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTCTGCGC 17881 Query 80685 CTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCC 80744 || | ||| ||| |||||||||| |||||| | ||||||| ||||| ||||| Sbjct 17880 CTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGACGCC 17821 Query 80745 GATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTT 80804 ||| ||||||| ||||||||| ||||||| |||| || ||||| | ||||| ||||| Sbjct 17820 GATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAGTT 17761 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 ||||| | ||||| |||||| || || | | || || | || ||| Sbjct 17760 CACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATTTTGGCTACCTCTTTCAGCTTCGC 17701 Query 80865 AAAGTCGAATT---GGTTCCCCTTCACAAA--TGCCGGAAGGCTCAGGGACGCCAGATTG 80919 || || | ||| || || || || || || | || ||||| ||| Sbjct 17700 GAAATCATACGTACGGTCGGACTGGACGAACATGTTC-AACGCA-ATCGAGGCCAGGTTG 17643 Query 80920 CACACGGCCACCTCTTCAGCATCTGTAA--ACTCGACGATTTCCGTGCACAAATTAGAAG 80977 ||||| ||||| || || | || | |||| || || || ||||| | ||||| Sbjct 17642 CACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTTAGAGC 17585 Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCG-TTGCAAGCGTCCTTGTAGCAC 81036 |||| || || || | ||||| |||||| | || ||| ||||| ||||||||||| | Sbjct 17584 ACTTGATGGTGCCGATGTTTTGCTGGTT-GCTTTTGCGATTGCACGCGTCCTTGTACAGC 17526 Query 81037 ATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCC 81096 |||||||| || ||||| ||||| || | || ||| || ||| | || ||||| Sbjct 17525 ATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCTGCGCC 17466 Query 81097 TTGACCACCTTGCG---GAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAA 81152 || |||| ||| ||| ||| || | |||| | ||| | |||| ||||| Sbjct 17465 TT---TACCTGGCGGATGAAGCGGCCCTCCTTCTCATAGCCCGTGTACAACTTC-TCGAA 17410 Query 81153 --CTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAG 81210 ||| || || ||| || | | | || || |||| |||||||||| ||| Sbjct 17409 CTCTTCGCCCCACGAA--TCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCA- 17353 Query 81211 TCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAAC 81267 || ||||| ||| || || |||||| || || |||||||| ||| |||| Sbjct 17352 --CGTTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGAATCCAGAGCGCGTAGAAC 17295 Query 81268 AGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327 | ||| || |||| ||||||| | || ||| || || | ||| || | Sbjct 17294 ATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAAAAACTCAAAC 17235 Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCC 81384 | || | ||||| |||||||| || | ||| | || ||| || | ||| ||| Sbjct 17234 ACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCCGGCCGCTTATTGCCGCCC 17175 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 || | |||||| || || || ||| | || |||| ||| || | | || | || Sbjct 17174 TGATCGACGTACCGTGCCGTGTTGTTGTACACGCGCAGCATCGGCACCAACCCGTTCGAA 17115 Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGAC 81502 |||||||| || ||| || ||||| || || | | ||| || || | Sbjct 17114 ATTCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTT--CAGCC 17057 Query 81503 CGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCT 81562 |||||||||| | |||| || ||| | || ||| | |||| || || || || || | Sbjct 17056 CGATGCCACCGGCAGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCTT 16997 Query 81563 CGATGCTATC 81572 ||||||| || Sbjct 16996 CGATGCTGTC 16987 >seq27055 Length=447146 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 |||||| || || | || ||||||||| ||||| ||||| |||||| | | | | Sbjct 53886 GCGGTCGATCCCGTCCATGCTGGACGGCCTGAAGCCGGGCCAGCGGAAGGTGTTGTTCAC 53945 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACA--TGAAGGTGGCGCAGCTGTCGGGCTACGTG 32079 ||| ||||| || || | || || | ||||||||||||||||| |||| | ||| Sbjct 53946 ATGCTTCAAGCGTAA--TGACAAGCGAGAGGTGAAGGTGGCGCAGCTGGCGGGTTCGGTG 54003 Query 32080 GCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTT 32139 || || | ||||| ||||||||||| ||| || || || || ||||| Sbjct 54004 GCGGAAATGTCCGCCTACCACCACGGCGAACAGTCACTTTGCTCGACGATCGTGAACCTG 54063 Query 32140 GCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGG 32199 || ||||||| |||||| || ||| | || | || || || ||||| || Sbjct 54064 GCGCAGAACTACGTCGGTAGCAACAACATCAATCTGCTGTTTCCGGGAGGTCAGTTCGGT 54123 Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCG 32257 || ||| | |||||||||||||| || || | | ||||||||||| | ||| Sbjct 54124 ACGCGGTTGACCGGTGGCAAGGATAGCGCCAGTCCGAGGTACATCTTCACGATGATGTCG 54183 Query 32258 CACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTG 32317 || |||||| || ||| | ||| ||||||| || |||| |||| | | | Sbjct 54184 ACACT--GACGCGGTGCATCTTCCATCCGCTGGACGATCCGCTGCTGGAGTATCAGTACG 54241 Query 32318 ATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGA 32377 | ||| |||||| |||||||||| | || ||| | | |||||| | || | | Sbjct 54242 AGGACAACCAGCGGATCGAGCCGGTTTGGTATCTGCCGATCGTGCCGATGCTGCTGATCA 54301 Query 32378 ACGGTGCAGAAGGCATCGGAACGGGGT 32404 ||||||| || || ||||| ||||||| Sbjct 54302 ACGGTGCGGACGGTATCGGTACGGGGT 54328 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 |||||| || || | || ||||||||| ||||| ||||| |||||| | | | | Sbjct 65895 GCGGTCGATCCCGTCCATGCTGGACGGCCTGAAGCCGGGCCAGCGGAAGGTGTTGTTCAC 65836 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACA--TGAAGGTGGCGCAGCTGTCGGGCTACGTG 32079 ||| ||||| || || | || || | ||||||||||||||||| |||| | ||| Sbjct 65835 ATGCTTCAAGCGTAA--TGACAAGCGAGAGGTGAAGGTGGCGCAGCTGGCGGGTTCGGTG 65778 Query 32080 GCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTT 32139 || || | ||||| ||||||||||| ||| || || || || ||||| Sbjct 65777 GCGGAAATGTCCGCCTACCACCACGGCGAACAGTCACTTTGCTCGACGATCGTGAACCTG 65718 Query 32140 GCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGG 32199 || ||||||| |||||| || ||| | || | || || || ||||| || Sbjct 65717 GCGCAGAACTACGTCGGTAGCAACAACATCAATCTGCTGTTTCCGGGAGGTCAGTTCGGT 65658 Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCG 32257 || ||| | |||||||||||||| || || | | ||||||||||| | ||| Sbjct 65657 ACGCGGTTGACCGGTGGCAAGGATAGCGCCAGTCCGAGGTACATCTTCACGATGATGTCG 65598 Query 32258 CACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTG 32317 || |||||| || ||| | ||| ||||||| || |||| |||| | | | Sbjct 65597 ACACT--GACGCGGTGCATCTTCCATCCGCTGGACGATCCGCTGCTGGAGTATCAGTACG 65540 Query 32318 ATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGA 32377 | ||| |||||| |||||||||| | || ||| | | |||||| | || | | Sbjct 65539 AGGACAACCAGCGGATCGAGCCGGTTTGGTATCTGCCGATCGTGCCGATGCTGCTGATCA 65480 Query 32378 ACGGTGCAGAAGGCATCGGAACGGGGT 32404 ||||||| || || ||||| ||||||| Sbjct 65479 ACGGTGCGGACGGTATCGGTACGGGGT 65453 Score = 107 bits (118), Expect = 2e-18 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236 || || || ||||| || | ||| ||||||||||| || ||||| ||| ||||| Sbjct 53032 GGATCGAAGAAGTCGAAGATCAAGGGCATTCCGAAGCTGGAGGACGCAAACGATGCCGGG 53091 Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296 | | ||| || | | | |||||||| || | |||||||| |||||||| || || | Sbjct 53092 TCGCGCAACTCTCTCAACTGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAAACGTTG 53151 Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356 || | | || || | || || |||||| | ||| ||| || |||||||| || || Sbjct 53152 GCCGTGTCGGGGCTGGGGGTGGTCGGGCGCGACACGTACGGTGTTTTTCCGCTGCGCGGT 53211 Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416 |||| || ||||| || || || | || ||| | ||| || | ||| | | Sbjct 53212 AAGCTGCTGAACGTGCGCGAAGCGACGCACAAGCAGATCCTGGAAAACGCGGAGATCAAC 53271 Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443 ||||||| |||||||||||||| ||| Sbjct 53272 AACCTGATCAAGATCCTCGGGCTGCAG 53298 Score = 107 bits (118), Expect = 2e-18 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236 || || || ||||| || | ||| ||||||||||| || ||||| ||| ||||| Sbjct 66749 GGATCGAAGAAGTCGAAGATCAAGGGCATTCCGAAGCTGGAGGACGCAAACGATGCCGGG 66690 Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296 | | ||| || | | | |||||||| || | |||||||| |||||||| || || | Sbjct 66689 TCGCGCAACTCTCTCAACTGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAAACGTTG 66630 Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356 || | | || || | || || |||||| | ||| ||| || |||||||| || || Sbjct 66629 GCCGTGTCGGGGCTGGGGGTGGTCGGGCGCGACACGTACGGTGTTTTTCCGCTGCGCGGT 66570 Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416 |||| || ||||| || || || | || ||| | ||| || | ||| | | Sbjct 66569 AAGCTGCTGAACGTGCGCGAAGCGACGCACAAGCAGATCCTGGAAAACGCGGAGATCAAC 66510 Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443 ||||||| |||||||||||||| ||| Sbjct 66509 AACCTGATCAAGATCCTCGGGCTGCAG 66483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570065416038800