Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20cracens_20[genbank_20GCA_5F002091845.1_202017-04-14] 34,365 sequences; 326,465,827 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2173 203 4e-47 >seq2173 Length=41539 Score = 203 bits (224), Expect = 4e-47 Identities = 963/1520 (63%), Gaps = 15/1520 (1%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| || || |||| || | || |||||| || ||||| || || | || Sbjct 18215 TGAAACTCGCCCGACAGAACGCGCCGGTTGTAAACGTTGGACGTATACGGCTCGAACGAC 18156 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || ||||| ||||||||||| || || ||||| || ||||| || || | || | Sbjct 18155 TCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCCGTCGGCATCGGCGCGAGCAGCAGTGAG 18096 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | | ||| ||| | || || || || || ||||| ||| || || | Sbjct 18095 TTGCGCACACCGTGTTTGGCAATCTTTTCCTTCAGCGTCGCCCAATTCCACAGGTCCGTC 18036 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATAT 77366 ||||| | ||| | ||||| || ||||| || || || | || || | || Sbjct 18035 GGTACCTTGTTCCACATGTCGTACTGCAGAATGCCCTTGCTCACCGGAGACCCCTCGTAC 17976 Query 77367 GTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAA 77426 || || || ||||| || | || | || || || ||||||| || ||||| || Sbjct 17975 GTCTCGTACGGTCCCTCCTGGGCGGCCATCTCGCAGCTAGCTTCCAGCGCACCGTAGTAG 17916 Query 77427 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGT 77486 || || || || |||| || |||||| | || || || ||| || |||| | Sbjct 17915 ATGGTCTCAAATATCTGCTGATTGAGCTTCTGCGCCTCCGCACTCTCGTACGGGAAGCCC 17856 Query 77487 AAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 77546 | | || || ||||| || | ||||| || || ||||| || || | || | | | Sbjct 17855 ATCAAGATGAACGCATCAGCCATACCCTGGACGCCGATACCGATCGGACGGTGGCGCATG 17796 Query 77547 TTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTT 77606 || || || ||||| || | || || | || | ||| ||||| || || | || Sbjct 17795 TTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAGTTCACGTCGATAATCTTGTTCAAGTTG 17736 Query 77607 CTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATA--- 77663 | || | ||| | || || || || || |||||| | | | || Sbjct 17735 CGCGTCACGATTTTGGCTACCTCTTTCAGCTTCGCGAAATCATACGTACGGTCGGACTGG 17676 Query 77664 ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA 77723 || ||||||||||| || || || || || || || || || || || | | | | | Sbjct 17675 ACGAACATGTTCAACGCAATCGAGGCCAGGTTGCACACCGCCACTTCGTC--CTTCGACG 17618 Query 77724 --TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGT 77781 || | | |||||||| || || ||| || ||||| ||||| | ||||| |||| Sbjct 17617 AGTACTCCACAATCTCGGTGCAAAGGTTAGAGCACTTGATGGTGCCGATGTTTTGCTGGT 17558 Query 77782 TGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTG 77841 |||| || |||||| | |||||| || || || |||| || || || | ||| | Sbjct 17557 TGCTTTTGCGATTGCACGCGTCCTTGTACAGCATGTACGGTACGCCCGTCTCCACCTGGG 17498 Query 77842 ATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCGCCTCTCT 77900 ||||||| || | ||| | || || || |||| | || | || | ||| Sbjct 17497 ATTCGATGATCGCAAACCACA-GATCCTGCGCCTTTACCTGGCGGATGAAGCGGCCCTCC 17439 Query 77901 CTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGG 77960 | ||||| || || | | || || || || ||||| ||| ||||||| || Sbjct 17438 TTCTCATAGCCCGTGTACAACTTCTCGAACTCTTCGCCCCACGAATCGGCCAATCCGGGA 17379 Query 77961 CATTCATTTGGGCACATCAATGACCA-GTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 || || | ||||||||||| ||| || | || ||| || || | ||| || || Sbjct 17378 CAGTCGTGCGGGCACATCAAACTCCACGTTTCGTTCG-CCTCCACGCGCTGCATGAACAG 17320 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 ||| || ||||| || || || | || || | | || || || || || || Sbjct 17319 ATCCGGAATCCAGAGCGCGTAGAACATGTCCCGTGCGCGCACCTCCTCCTTGCCGGTGTT 17260 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 || || ||||| | |||||| | | ||| ||||| || || || || || || | Sbjct 17259 TTTCTTCAGATCCAAAAACTCAAACACATCGCCGTGCCACGGCTCCAGGTAGATGGCAAA 17200 Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199 | || || || ||||| || |||||||| | || | || ||||| || || || | Sbjct 17199 CGCACCCGGCCGCTTATTGCCGCCCTGATCGACGTACCGTGCCGTGTTGTTGTACACGCG 17140 Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 || ||| || | | ||||| || |||| || || || || || || |||| | || Sbjct 17139 CAGCATCGGCACCAACCCGTTCGAAATTCCGTTCGTGCCGGAGATGTACGTTCCCTTCGC 17080 Query 78260 GCGAAT--ATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317 || || | | | | | | ||| || || || || ||| || || || ||||| Sbjct 17079 CCGGATGCAGTGC--ACGTTCAGCCCGATGCCACCGGCAGACTTGGAGATCAGTGCGCAC 17022 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 | |||| || |||||||| || || || ||||| || |||| | || ||||| || Sbjct 17021 TGCTTCAGCGTGTCGTAGATGCCTTCGATGCTGTCGTCGGACATGGTCAGCAGAAAGCAA 16962 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 |||| || || | || | || || | ||||| || ||||| ||||| Sbjct 16961 GACGACAGCTGGGGACGCTGCGTAGCCGCCGCGAACATGGTCGGCGAGGCATGGGTAAAG 16902 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | || || || ||||| || || || || || | || |||||| ||| || Sbjct 16901 TAACGCTCCGAGAGCAGATTATACGTCTCGATCGCAGCCTCGATGTCCGTGCCATGGATG 16842 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 || | || || ||||||| ||||||||| || || || || |||| || || ||| Sbjct 16841 CCGATGGCGACGCGCATCAGCATATGCTGCGGCCTCTCGACAATCTTGCCCTTGATCTTC 16782 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 ||||| || || |||| ||||| || || ||||||||||| ||||| | ||| Sbjct 16781 AACAAATACGAACGCTCCAGGGTTTTGAAGCCGAAATAGTTGTACCCGAAGTCACGATCG 16722 Query 78618 TAAATAATAACAGAATTTAG 78637 ||||||||| | |||||||| Sbjct 16721 TAAATAATAGCCGAATTTAG 16702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694370396333600