Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5733 122 9e-23 seq2169 91.5 2e-13 >seq5733 Length=11217 Score = 122 bits (134), Expect = 9e-23 Identities = 282/415 (68%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA-GTCGTA 16094 ||| || || || || || || || |||| | |||||||| || || | | |||| | Sbjct 2185 ATCGGCCACGAACTCAATGTACTGCGACATCAGATCGCAATTCATACCGAGCATGTCG-A 2243 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 |||| || ||||| || ||||||| ||| || ||||||||||| || |||||| || | Sbjct 2244 CCGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACAACCGCATCACGAATGATGTCCG 2303 Query 16155 TGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | | || | ||| || ||| | || |||| || ||||| || || || |||||| Sbjct 2304 TCACGCGCTCCTTC-GAGGGTTTCTGTACCAGGTACTTGAACATCAGGCAGGCAAAGTCG 2362 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 || || ||||||||||| | || || ||||| || || || | || ||||| Sbjct 2363 CAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTCGAGAACGTCAGTCCCGGCATCAGG 2422 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || || ||||| | |||||| || || ||||| || ||||| || || || || Sbjct 2423 CCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATGCCTTCGACG 2482 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAG--CATCTTTATTACGA-ATCCATTTC 16390 | ||||| || | | |||| ||| | || | | |||| | ||| ||||| ||| Sbjct 2483 GCCGCAAACGCCACGACACGTT-CGCCAAAGTTGGCCTTCTTGCT--CGAGATCCAGTTC 2539 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 || |||| || || || | |||| || || |||||| ||||| || |||| Sbjct 2540 AGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACGTTTCAATGGCATTGAACA 2594 >seq2169 Length=21917 Score = 91.5 bits (100), Expect = 2e-13 Identities = 186/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 |||||||| || || || ||||| | |||||||||||| | ||| ||||| | ||| Sbjct 3942 TTCATGTAACGAATTTTGCCAAAAATTTCCCGCTCCTTCCATCC-CTGATCGTGTATTCC 3884 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTT 119054 || | | ||| | || || ||||| ||||| ||||| || || | |||| Sbjct 3883 CGCGATCGACCACATGCACCCGACGTACCCGTTCGGATCGCGCCCATCCAGGCTGTACCG 3824 Query 119055 ATCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 |||||| | ||||| | | | | | ||| ||||| || || |||| ||||||| Sbjct 3823 ATCGTTCAGATAGATCGCCGTCTCG-AGCGCCTCCTCCGGTGTTTTCGTCCACTCCAGTA 3765 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | || || ||||||||||| || | | | |||||||| || || || | |||||| | Sbjct 3764 TCTTCTTCGCCCAGTACATCCGCAGAAAGCCGTGCATCTTGCCTTCCCGCACCATCTGCA 3705 Query 119174 GTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 | || || | |||||| ||| ||||| || Sbjct 3704 GCTGGGCCGAGTTCCACAGATCGTCGTGCGT 3674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511311081505840