Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq78 140 2e-28 >seq78 Length=100849 Score = 140 bits (154), Expect = 2e-28 Identities = 241/345 (70%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||||||||| || ||||| |||| | || ||||| ||||||||||| || || || Sbjct 92873 AGTGACATGTGCGATCATATGGGTTAGCAAGGAGTAGCTTGCAATGTTAAAAGGTACACC 92814 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || || | ||| ||||||| ||||||| || || || |||| |||||| ||| | Sbjct 92813 CAAACCGACATCGGCTGATCGCTGATACATCTGGCAAGACAGCTCCCCATCAGCAACAAA 92754 Query 101872 AAATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCC 101930 |||||| || ||| ||||||||||| | |||| || |||||||| ||| ||||| Sbjct 92753 AAATTGTGCCAA-ACAGTGACAAGGCGGTAGGGCCATATTGGGAATGTCGGAAGGATTCC 92695 Query 101931 AAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTT 101990 |||| | ||| | || | | ||| ||| || ||||||| | | ||||| | | Sbjct 92694 AAGCGCTCATGATGATTCGACGATCATAAGGATTGTTTTTTATTTTGTGAATCACTTCTG 92635 Query 101991 TTAATTGGTCAACTCCTTCTCCTTTATAATCG-CGCCCAACACCTTTATATTCTGCTCCG 102049 || ||||| | ||| | |||| | |||||| || | ||| || | ||| || Sbjct 92634 CCAACTGGTCGATTCCCTGTCCTGTGTAATCGTCGTGGCA-TGTTTTGTACTTTGCGCCA 92576 Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCA 102094 ||||| | ||||||||| || || || || || ||||| ||| || Sbjct 92575 AAATGGCGCCACTGAAAGCCGTAAACTGGGCCTAGATCACCTACA 92531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361180042770662