Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 448 6e-121 seq5733 113 5e-20 >seq2 Length=295332 Score = 448 bits (496), Expect = 6e-121 Identities = 1220/1846 (66%), Gaps = 40/1846 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || || || || || | ||| ||||| ||||| || | || | |||| ||||| ||| Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAA 211994 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || || || || ||| ||| |||| || |||| || || || | ||||| | Sbjct 211993 TGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGAT 211934 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| || || | || ||||||||||| ||| || ||| | |||||| Sbjct 211933 TGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAGATTTCC 211874 Query 53009 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATAGA 53064 || | ||||| || | || | | | |||| ||||| |||| ||| || | || || Sbjct 211873 CACACTGTTTTGTACAGGTCACGGA-TCTCTTTTGGAATTGTTTCTATGCTTTGGATGGA 211815 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| || || || | ||||| || || || ||| | || | || | Sbjct 211814 TCCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAG 211755 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184 | || |||||||| | || || || || || || || ||||| || | ||| | || Sbjct 211754 ATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATA 211695 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 || || || ||||| || | ||||||||| || ||||| ||||| || ||||| || Sbjct 211694 AACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGC 211635 Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 53304 |||||||| || |||| | ||| ||| | || |||| || || || ||||| Sbjct 211634 GGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTT 211575 Query 53305 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 53364 || |||| ||||| ||||||| |||| | |||| | Sbjct 211574 TAACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATAC 211515 Query 53365 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 53423 || || || | | || |||| |||| || ||||| || || ||| || |||| | Sbjct 211514 GCCTTTGCTTACCGGACT-TCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACT 211456 Query 53424 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 53483 | |||||||| || | ||||| || ||||||||||| || || | | ||| || | || Sbjct 211455 CGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTT 211396 Query 53484 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 53543 | || || ||| || | ||||| | | ||| || || || || | ||||| | Sbjct 211395 GGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCA 211336 Query 53544 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 53603 |||| || || || || || || | | | |||||| | || || || | ||||| | Sbjct 211335 CACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGT 211276 Query 53604 AATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCA 53660 | || ||||| || ||||| || || || | | ||||| ||| | | || ||||| | Sbjct 211275 AGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAAT--CTTAG-CGACTTCCTTAA 211219 Query 53661 GTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCC 53716 | || | |||||| | ||||| ||| |||| |||||||| | || || || ||| Sbjct 211218 GCTTTACAAAATCGTAAGTCTTGTCTGTCT-TTACGAACATGTTTAGGGCGATCGAAGCC 211160 Query 53717 AGATTACAAACGGCTA---CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 53773 |||||||| || || | | || || | || | || | || ||||| ||||| | Sbjct 211159 AGATTACACACTGCAATTTCGTCTTTCG-ATGAG--TACTCTACAATCTCTGTGCACAAG 211103 Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 ||| ||||| ||||| || | ||| |||||||| || || || || |||||||| Sbjct 211102 TTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTG 211043 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACA 53893 || || || | || || ||||| | ||| ||||| || || || | ||| | | Sbjct 211042 TACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCC 210983 Query 53894 CGAGCCTTTA-TTATAGATTTGTATC-TCTTTTCTCTTTCGTATAGTGTATACAATCGTT 53951 | ||| ||| || | || | | ||| || | || | ||||| | || |||| | | Sbjct 210982 TGTGCCCTTACTTGTCGAAT-GAATCGTCCCTCCT-TCTCGTAACGCGTGTACAGTGTCT 210925 Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 54011 | ||||| || |||||| | |||| |||||||| || | || ||||||| || Sbjct 210924 CGAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCC 210865 Query 54012 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 54071 || | ||| | ||| || ||||||||||| ||||| || ||||| | ||| || | | Sbjct 210864 ACATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCG-TAGA-A 210807 Query 54072 GATCTCTGGTTCTATGT---TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 || || || | | | ||||| || || || || || || ||||| || ||| | | Sbjct 210806 CATGTCACGTGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGA 210748 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 | |||| |||||| ||||| | |||||||| | | |||| || |||||||| || | Sbjct 210747 ATACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCAC 210688 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 ||||||| | |||| || ||||| || || |||| || ||| || | | || || | Sbjct 210687 CCTGATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCG 210628 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308 | || || || || ||||| || |||| | || |||||| || || | Sbjct 210627 AAATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCC 210568 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || ||||| ||| || || | || || | |||| |||||||||||| || | Sbjct 210567 CAATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTT 210508 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC---TAG 54425 | |||||||| || |||| | || |||||||| |||| || |||| ||| Sbjct 210507 CAATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAG 210448 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 | ||||| || | ||| || || || || ||||| | || ||||| | |||| Sbjct 210447 CTGCCGCA---AACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGT 210391 Query 54486 ACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 | |||||||| |||| || || || ||| || || | || || ||||| |||| Sbjct 210390 ATGTCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACA 210331 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 ||||||| || | |||||| ||||| || || |||| ||| ||||| |||||| | Sbjct 210330 TGTGCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATG 210271 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||| || ||||| ||||||||| ||| || || |||||||| || Sbjct 210270 TTTTGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGAT 210225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831 |||| ||||||||||||||||||| || || || ||||||| || || || || || || Sbjct 209782 AAATTGTTTTTTTGTTTCTTTGTGCAGGTTAGAAACGGCTAGTCGCGCCGCCAGGATCGC 209723 Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891 |||||| | ||| | || || |||| || ||| |||| || | |||| |||| | || Sbjct 209722 ATAATCAGCATGATCGGTCGTCAAAGTAGCAGCTGTTTCAGCAGCCAGATTGTCGAGCTC 209663 Query 54892 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 | ||| ||||| || ||| | || | || ||||||| Sbjct 209662 TTGCGTCGTTACACCTGAATAGAGCCCGTTTATGACCTTCA 209622 >seq5733 Length=11217 Score = 113 bits (124), Expect = 5e-20 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 24123 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 24182 || ||||||| || || || |||||||| || || ||||| | ||| | ||||| Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 24183 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 24242 || ||||| ||||| ||||| ||||||||||| || ||||| || |||| ||||| Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 24243 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG 24302 || ||||| || ||||| || |||||||| || | | | ||| ||| | ||| Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGC- 2517 Query 24303 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 24357 || || || ||||| || | ||||| || |||||||| ||||| || |||| | Sbjct 2518 CT-TCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACG 2576 Query 24358 TCTCTATAGCATTAAAGAG 24376 | || || ||||| || || Sbjct 2577 TTTCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593601653393760