Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5733 260 1e-64 seq3723 143 3e-29 seq1402 131 2e-25 seq48 114 1e-20 >seq5733 Length=11217 Score = 260 bits (288), Expect = 1e-64 Identities = 324/441 (73%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || ||||| || ||| |||||||||| || ||||||| || ||||| ||| || Sbjct 2594 TGTTCAATGCCATTGAAACGTTGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACT 2535 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| ||||| ||| ||||| || | ||||| || ||||||||||| | Sbjct 2534 GGATCTCGAGCAAGAAGGCCAACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGAAG 2475 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| || || || |||||||| || ||||||||||| || ||||| |||| Sbjct 2474 GCATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGATGC 2415 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || ||||| ||| |||||||| || || | ||||| || ||||| |||||||||| Sbjct 2414 CGGGACTGACGTTCTCGAACGAGCTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTG 2355 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| || |||||||| | |||| ||| ||| || |||||| | ||| ||| Sbjct 2354 CCTGCCTGATGTTCAAGTACCTGGTACAGAAACCCTCGAAGGAGCGCGTGACGGACATCA 2295 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTC-TG 117304 | || ||||| | |||||||| || | || |||| |||||||| || | || Sbjct 2294 TTCGTGATGCGGTTGTGATCGAGCAAGAATTTTTGACGAAAGCCCTGCCGGT-CGACATG 2236 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 || || | |||||||| ||||||||| ||||| |||||||| ||||| | ||||| Sbjct 2235 CTCGGTATGAATTGCGATCTGATGTCGCAGTACATTGAGTTCGTGGCCGATCGTTTGCTG 2176 Query 117365 CTCGAGCTGGTCGGCGCCAAG 117385 || ||| ||| | | | |||| Sbjct 2175 CTGGAGTTGGGCTGTGACAAG 2155 Score = 190 bits (210), Expect = 2e-43 Identities = 202/264 (77%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || ||||||||||| || ||||| || || || ||||||| || |||| Sbjct 2972 AGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTCGATCTATCGAAGGACATGAAAGACT 2913 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| |||| ||| | ||| || ||||||||| ||||||||| ||||| || ||| Sbjct 2912 GGGAATCGCTGAAACCG-AGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTTGCC 2854 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || ||| || ||||| |||||||| ||||| || || ||| ||||||||| ||||| Sbjct 2853 GCATCCGATGGTATCGTTAACGAGAACCTGGTGGAACGCTTCAGTCAGGAGGTACAGGTA 2794 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | || || || ||||| ||||||||||| || || ||||| || |||||| || ||| Sbjct 2793 ACGGAAGCACGCTGCTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGATG 2734 Query 116894 TATTCGACCCTCATCGACACGTAC 116917 || ||| || |||||||||||| Sbjct 2733 TACTCGCTGCTAATCGACACGTAC 2710 >seq3723 Length=15797 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||||||||| ||||| |||||||| | || ||||| |||| | Sbjct 4241 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGA-GCCATC 4183 Query 40750 G-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 | ||| | ||| | |||| ||| || | ||||| ||||| |||||| | || || Sbjct 4182 GGACACGATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 4123 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 4122 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTATCGGACTACAA 4063 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| |||||||| | || || ||||| ||| |||| Sbjct 4062 CATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCG 4027 >seq1402 Length=30251 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 9038 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 9097 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | || || ||||||||||| |||| Sbjct 9098 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGAT 9157 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || || || |||||||| |||| ||||| || ||||||| Sbjct 9158 CAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTAC 9217 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||| ||||||||| |||| || || || ||| | ||| || | || |||| Sbjct 9218 AACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGGCG 9269 >seq48 Length=116589 Score = 114 bits (126), Expect = 1e-20 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| |||||||| | || ||||| |||| Sbjct 116329 AATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGA-GCCAT 116387 Query 40749 CG-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 || ||| | | |||| | |||| || || | ||||| |||||||| || | || Sbjct 116388 CGGACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGAT 116446 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| ||| || || |||||||| |||| || || || ||||||| Sbjct 116447 CAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTAC 116506 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| | || |||| Sbjct 116507 AACATCCAGAAGGAGTCGACCTTGCA 116532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515115112841120