Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3723 147 2e-30 seq48 116 3e-21 seq1402 113 4e-20 >seq3723 Length=15797 Score = 147 bits (162), Expect = 2e-30 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||| |||| ||||| || || ||||||||||| | | Sbjct 4013 TACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGT--C 4070 Query 118570 TCATAGTGCGCG--TATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| ||| |||||| ||||| || || ||| ||||||||||||||||||| || Sbjct 4071 CGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGG 4130 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || ||||||||||| || ||| || || | ||||| ||||||| ||| Sbjct 4131 GGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTC 4190 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 4191 GACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATG 4242 >seq48 Length=116589 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || ||| || || || Sbjct 116538 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 116479 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||||||| ||||| |||||||||||||| Sbjct 116478 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 116419 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||||| ||||||||| | || | || ||| Sbjct 116418 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 116359 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 116358 CCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 >seq1402 Length=30251 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || ||||||||||| ||| || ||||| ||||| Sbjct 9250 CACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTC 9191 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| |||||||||||||| || || ||||||||||| || Sbjct 9190 CAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 9131 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| || |||| | ||||||||| | ||| | || || Sbjct 9130 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 9071 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || |||||||| Sbjct 9070 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433744946528104