Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq48 125 6e-24 seq1402 114 1e-20 seq3723 86.0 5e-12 >seq48 Length=116589 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| |||||||||||| ||| || |||| ||| Sbjct 116538 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 116479 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| || || ||||| | |||||||||||| Sbjct 116478 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 116419 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||| ||||||| || || |||||| Sbjct 116418 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 116359 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 116358 CCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 >seq1402 Length=30251 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||||||||||||| |||| |||| |||| ||| Sbjct 9249 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTCC 9190 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| ||||| || || || || | |||||||| ||| Sbjct 9189 AGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGG 9130 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| ||||| | |||||| ||||| Sbjct 9129 ATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTA 9070 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| || || || || ||||| ||||| ||| Sbjct 9069 CCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 9037 >seq3723 Length=15797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| ||| ||| | || ||||| || || |||||||| Sbjct 4051 TCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 4110 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| || || || || | |||||||||||| || ||| ||| || Sbjct 4111 ATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTT 4170 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| ||| ||||| | || || |||||||| || || || ||||| Sbjct 4171 TCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACG 4230 Query 45326 AAGATTTGCATG 45337 || || |||||| Sbjct 4231 AAAATCTGCATG 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394997380309402