Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 839 0.0 seq5733 203 3e-47 seq3723 102 7e-17 seq1402 91.5 1e-13 >seq2 Length=295332 Score = 839 bits (930), Expect = 0.0 Identities = 1356/1942 (70%), Gaps = 19/1942 (1%) Strand=Plus/Minus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 || |||||||| ||||| || || || || ||||||| |||||||| | |||||||||| Sbjct 212086 GTTTTGTCCACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGCAAATAATACATG 212027 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 |||||||||| ||||||||||| |||| ||||| |||||||| | || ||||| || Sbjct 212026 CCCGTCTTCAATCCCATCTTCCAGCCGTAGAAATGGATCGACGTGAGCTTGCCATAGTTC 211967 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | | | || | |||||||| || ||||| || || || ||||||||||| Sbjct 211966 GGCTCGGCTACGTGTATGTTGAACGATTGTGATTGATCAATGAATGCACCTCGATCGGCA 211907 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| || || |||| | ||| |||||||| || || |||||||| | | |||| Sbjct 211906 GCCATTTTAATGCATGTTTTTACCGAGATTTCCCACACTGTTTTGTACAGGTCACGGATC 211847 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 ||| || || | ||| || || |||| ||| || |||||| | ||| || || Sbjct 211846 TCTTTTGGAATTGTTTCTATGCTTTGGATGGATCCATTATTGGACAAGAT---GTTGTTC 211790 Query 22403 ATCGTATCG---TTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459 || ||||| | ||||| || || || |||| ||||| | |||||| |||||||| Sbjct 211789 TTCATATCGAGATCCCACAGCCCCATCGCAGTCAGATCTTGCAGGAGATGATGGTTCACC 211730 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || |||||||| ||||| || || || | |||| ||| |||||| |||| |||||| Sbjct 211729 ACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTACGGCTCGAAA 211670 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 || |||||||| |||| ||| || || || ||||||||||||||||| ||||| |||| Sbjct 211669 GACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCCAAAAGTAAT 211610 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAAT-TTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638 || || | | |||||||||| || ||| || || | | | ||||| ||| ||||| Sbjct 211609 GAATTACGAATTCCGTGCTTTGCTATCTTTTCT-TTTAACTCGGCCCAGTTCCATAGATC 211551 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 || || | |||| |||||| ||||| || || ||||| || |||| || || Sbjct 211550 ---CGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGACTTCC 211494 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 ||| ||||| ||||||||||| | |||| | ||||| ||||| |||| ||| || Sbjct 211493 TTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCCAGCGCACC 211434 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGG 22818 || || || || || || |||| | |||| | ||| | ||||||||||||| Sbjct 211433 ATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTACGG 211374 Query 22819 CATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 ||| ||||| | | ||| || || |||||||| || || || || || || || | || Sbjct 211373 -ATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATGGGCCTGT 211315 Query 22878 TTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGT 22937 || || || || ||||| || | ||||| | || ||||||| || ||| Sbjct 211314 GGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTGATATCGATTATTTTGT 211255 Query 22938 TCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCG 22997 ||| || | |||||||| || | | |||| |||| || | | Sbjct 211254 TCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAAAATCGT-AAGTCTTG 211196 Query 22998 ATTGT-ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 ||| || ||| |||| | ||||||||| || ||||| || || || | |||||| Sbjct 211195 TCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTGCAATTTCGTCT 211136 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 || || | |||||||||||| || || || | || |||||||| ||||| | ||| Sbjct 211135 TTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGTGCCAACATTC 211076 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 || |||||||| |||||||| | ||||||||| ||||| ||||| |||||| || Sbjct 211075 TGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCC 211016 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG 23236 |||||||| || ||||| || ||||| | ||| || || |||| | | | | Sbjct 211015 ACCTGCGATTCAATGATTGCATACCACAAATCCTGTGCCCTTACTTGTCGAATGAATCGT 210956 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || || | |||||| ||||| | || || || |||| || || |||| Sbjct 210955 CCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCTTCACCCCAAGTTTCCGCCAAC 210896 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 || || | | || ||||| |||||||||||| || | || || ||| ||||| Sbjct 210895 CCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCCTCTACCCGTTTCATA 210836 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || |||||||||||||| | ||||||||||| || || || ||||||||||| |||||| Sbjct 210835 AACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACGCACCTCCTCCTTGCCG 210776 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||| || |||| ||||| ||| || || || || ||||||| || |||||||| | | Sbjct 210775 GTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCATGGTTCGAGGTATATG 210716 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||| || ||||||| || ||||| |||||||| || || ||||| |||||||||||| Sbjct 210715 GCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCGGGCTGTGTTGTTGTAC 210656 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 |||| |||||||| || | ||||| || ||| ||| | | || || Sbjct 210655 ACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGCCTGAGATGTACGTTCCC 210596 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 || || |||| |||||| | | || || || || | ||||| || |||| ||| Sbjct 210595 TTCGCGCGAATACAGTGAACATTCAGCCCAATTCCGCCTGCTGATTTTGAAATCAGCGCA 210536 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || || || || || || ||||| || || || || || || | | | || ||| Sbjct 210535 CACTGCTTTAGCGTATCATAGATACCTTCAATACTATCGTCAGACATGGTTAGCAGAAAA 210476 Query 23717 CACGAAGACA--TTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 || || |||| | || | || ||||||| |||| |||| ||||| ||| || | Sbjct 210475 CAAGATGACAGCTGTGGACGTT--GCGTAGCTGCCGCAAACATGGTCGGTGAGGCATGGG 210418 Query 23775 TAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGT 23834 |||| || | | ||| | | ||||| || |||||||| ||||| ||||| || || | Sbjct 210417 TAAAATAACGCTCCGAAAGCAAGTTGTATGTCTCGATGGCTGCATCGATGTCTTCACCAT 210358 Query 23835 GTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAA 23894 |||||||||| || |||||||||| ||||| || || | || || | || || | Sbjct 210357 GTATACCGATCGCAACGCGCATCAACATGTGCTGCGGACGTTCAACAATCTTACCCTTGA 210298 Query 23895 TTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCAC 23954 | || |||| ||| || |||| || ||||| || ||||| |||| || ||| || | Sbjct 210297 TCTTCAACAAATAGGACCGTTCCAATGTTTTGAACCCAAAGTAGTTGTATCCAAAATCGC 210238 Query 23955 GATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAA 24014 |||||| | ||||||||||||| ||||| |||||| | || | || || || | Sbjct 210237 GATCGTAAATGATGGCCGAATTCAGACGGTCCGCATTATCCATTATCACCTTATAGTGGA 210178 Query 24015 AATTCGATATCATCGGCGTTTT 24036 ||| ||| ||||| || | ||| Sbjct 210177 AATCCGAAATCATGGGAGATTT 210156 >seq5733 Length=11217 Score = 203 bits (224), Expect = 3e-47 Identities = 293/411 (71%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAA 57937 |||||||| || || ||||| |||| ||| | ||||||||||| ||| || | || Sbjct 2595 CTGTTCAATGCCATTGAAACGTTGCCGTGCG-TAAAGAAGAAGGCAGACTGGGCACTGAA 2537 Query 57938 ATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 ||||| ||| | ||||| || | ||| | | | ||||| || |||||||| Sbjct 2536 CTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGA 2477 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||| || ||||| || |||||||| || || || ||| | ||||| || |||||||| Sbjct 2476 AGGCATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGAT 2417 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || |||||||| |||||| |||| ||||||||||| || || || || || Sbjct 2416 GCCGGGACTGACGTTCTCGAACGAGCTGATTTCGCGCGACGAAGGACTGCACTGCGACTT 2357 Query 58118 TGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACAT 58177 ||| ||||| |||| | || | || | ||||| || ||| ||| | |||||| Sbjct 2356 TGCCTGCCTGATGTTCAAGTACCTGGTACAGAAACCCTCGAAGGAGCGCGTGACGGACAT 2297 Query 58178 TATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCAT 58237 || || ||||| | |||||| | || ||| | || ||||||| ||||| | ||| Sbjct 2296 CATTCGTGATGCGGTTGTGATCGAGCAAGAATTTTTGACGAAAGCCCTGCCGGTCGACAT 2237 Query 58238 GCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 |||||||||||| ||| ||||||| ||||||||||||| || ||||| Sbjct 2236 GCTCGGTATGAATTGCGATCTGATGTCGCAGTACATTGAGTTCGTGGCCGA 2186 Score = 156 bits (172), Expect = 4e-33 Identities = 195/267 (73%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || || |||||||| ||||| || || || || ||||| ||| || | Sbjct 2972 AGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTCGATCTATCGAAGGACATGAAAGACT 2913 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAA----ATTTTATTAAACACGTGTTGGCGTTTTTC 57704 |||| || || ||| | ||| ||| |||| || |||||| | || || || Sbjct 2912 GGGAATCGCTGAAA----CCGAGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTT 2857 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAA 57764 ||||||||||||||||| ||||||||||| |||| ||| | || || || || || Sbjct 2856 GCCGCATCCGATGGTATCGTTAACGAGAACCTGGTGGAACGCTTCAGTCAGGAGGTACAG 2797 Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 || ||||| || | ||||||||||| |||||| | || || ||||| ||||| || Sbjct 2796 GTAACGGAAGCACGCTGCTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAG 2737 Query 57825 ATGTATTCGCTACTCATCGATACGTAC 57851 ||||| ||||| || ||||| |||||| Sbjct 2736 ATGTACTCGCTGCTAATCGACACGTAC 2710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 58323 TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAAC 58382 |||||||| || |||||||| || ||| | | |||||||||||||||||||||||| Sbjct 2072 TACAACACCAAGAATCCGTTCAGCTTCATGGAGTTCATCTCGCTCGAGGGCAAGACAAAC 2013 Query 58383 TTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 || ||||| || || || ||||||| ||||| | ||||||||| Sbjct 2012 TTCTTCGAGAAGAAGGTGGGCGAATACCAAAAGTGGGGCGTGATG 1968 >seq3723 Length=15797 Score = 102 bits (112), Expect = 7e-17 Identities = 167/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| |||||||| || || || || ||||| || ||||| | || || || || Sbjct 4245 AATCATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 4186 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || |||| |||||| || || || ||| | ||||||||| || | || || | Sbjct 4185 ATCGGACACGATCGAAAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGAATCCCCCCAG 4127 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGA 31365 | ||||||||||| || ||||| ||||| ||| |||| || | ||||| || Sbjct 4126 ATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTAT--CGGA 4069 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||| || ||||| || || |||||||| || |||| | || |||| Sbjct 4068 CTACAACATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCGACTCCGTGGTGGTA 4013 >seq1402 Length=30251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 9038 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 9097 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || ||| ||||| ||| | ||||| || Sbjct 9098 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGAT 9157 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || || || || ||| |||| ||| | || || ||| || Sbjct 9158 CAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTAC 9217 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || || ||||| ||||| ||| | ||| | || || Sbjct 9218 AACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGG 9267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445676344043040