Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq78 114 3e-20 seq5733 104 5e-17 >seq78 Length=100849 Score = 114 bits (126), Expect = 3e-20 Identities = 225/330 (68%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || ||| | || || || ||||| || || ||||| |||||||| || | || | || Sbjct 92535 GGTGATCTAGGCCCAGTTTACGGCTTTCAGTGGCGCCATTTTGGCGCAAAGTACAAAACA 92594 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 || |||||| || ||| |||| || || || ||||| | | | | | | Sbjct 92595 TGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAAGTGATTCACAAAATA 92654 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | | | ||||| ||||| | | || || |||| || ||||||||| || ||| | Sbjct 92655 AAAAACAATCCTTATGATCGTCGAATCATCATGAGCGCTTGGAATCCTTCCGACATTCCC 92714 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGAGAATT 35634 |||||| || || || || ||| || || | ||||||| ||| ||| |||| || | Sbjct 92715 AATATGGCCCTACCGCCTTGTCAC-TGTTTGGCACAATTTTTTGTTGCTGATGGGGAGCT 92773 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||| |||||| ||||||||||| | |||||||| ||||| || || || || ||||| Sbjct 92774 GTCTTGCCAGATGTATCAGCGATCAGCCGATGTCGGTTTGGGTGTACCTTTTAACATTGC 92833 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGC 35724 | ||||| | || || ||| |||| || Sbjct 92834 AAGCTACTCCTTGCTAACCCATATGATCGC 92863 >seq5733 Length=11217 Score = 104 bits (114), Expect = 5e-17 Identities = 159/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGA----TTTGGCGGA 101910 |||||||||| | ||||| | || ||||| ||||| || | ||||||| | Sbjct 2562 AAGAAGAAGGCAGACTGGGCACTGAACTGGATCTCGAGCAAGAAGGCCAACTTTGGCG-A 2504 Query 101911 ACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCAT 101970 || | || || ||||| || || ||||| |||||||| || ||| || || |||| Sbjct 2503 ACGTGTCGTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCTTTGCCGCCAT 2444 Query 101971 TTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTC 102030 ||||||| ||||||| | || | |||| || || || | ||| || ||| | ||||| Sbjct 2443 TTTCTGGCTCAAGAAGCGTGGCCTGATGCCGGGACTGACGTTCTCGAACGAGCTGATTTC 2384 Query 102031 TAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA 102075 | |||||||| || || |||||||||| ||| || |||| || Sbjct 2383 GCGCGACGAAGGACTGCACTGCGACTTTGCCTGCCTGATGTTCAA 2339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989379081274710