Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 497 1e-135 seq5733 127 3e-24 >seq2 Length=295332 Score = 497 bits (550), Expect = 1e-135 Identities = 1235/1855 (67%), Gaps = 34/1855 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || || || | ||| ||||| ||||| || | || | |||| ||||| ||| Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAA 211994 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||| || ||| ||| |||| || |||| || || || | ||||| | Sbjct 211993 TGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGAT 211934 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||||| || || | || ||||||||||| ||| || ||| | |||||| Sbjct 211933 TGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAGATTTCC 211874 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGA 62302 || | ||||| || | || | | | |||| ||||| |||| ||| || | ||||| Sbjct 211873 CACACTGTTTTGTACAGGTCACGGA-TCTCTTTTGGAATTGTTTCTATGCTTTGGATGGA 211815 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| || || || | ||||| || || || ||| | || | || | Sbjct 211814 TCCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAG 211755 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | || |||||||| |||| || || ||||| || || ||||| || | ||| | || Sbjct 211754 ATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATA 211695 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 || || || ||||| || | |||||||| || ||||| ||||| || ||||| || Sbjct 211694 AACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGC 211635 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 |||||||| || |||| | ||| ||| | || |||| || || || ||||| Sbjct 211634 GGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTT 211575 Query 62543 TAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAAT 62602 || | |||| ||||| ||||||| |||| | || |||| | Sbjct 211574 TAACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATAC 211515 Query 62603 ACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTT 62661 || || || | | || |||| |||| || || || || || ||| || |||| | Sbjct 211514 GCCTTTGCTTACCGGACT-TCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACT 211456 Query 62662 TACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTT 62721 |||||||| || | ||||| || |||||||||||||| || | | ||| || | || Sbjct 211455 CGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTT 211396 Query 62722 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62781 | || || ||| || | ||||| | | ||| || || || || | ||||| | Sbjct 211395 GGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCA 211336 Query 62782 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62841 |||| || || || || || || | | | |||||| | || || || | ||||| | Sbjct 211335 CACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGT 211276 Query 62842 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 62898 | || ||||| || ||||| || ||||| | | ||||| ||| | | || ||||| | Sbjct 211275 AGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAAT--CTTAG-CGACTTCCTTAA 211219 Query 62899 GTTTGAGAAAATC--AAATC--GCCCATCTATTACAAACATGTTCAATGCAACAGATGCC 62954 | || | |||||| || || | | ||| |||| |||||||| | || | || ||| Sbjct 211218 GCTTTACAAAATCGTAAGTCTTGTCTGTCT-TTACGAACATGTTTAGGGCGATCGAAGCC 211160 Query 62955 AGATTACACACGGCTA---CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 ||||||||||| || | | || || | || | || | || ||||| ||||| | Sbjct 211159 AGATTACACACTGCAATTTCGTCTTTCG-ATGAG--TACTCTACAATCTCTGTGCACAAG 211103 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 ||| ||||| || || || | ||| |||||||| || || || || |||||||| Sbjct 211102 TTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTG 211043 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || || || | || || ||||| | ||| ||||| || || || | ||| | | Sbjct 211042 TACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCC 210983 Query 63132 CGAGCCTTTA-TTATAGATTTGTATC-TCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 | ||| ||| || | || | | ||| ||| | || | ||||| | || |||| | | Sbjct 210982 TGTGCCCTTACTTGTCGAAT-GAATCGTCCCTCCT-TCTCGTAACGCGTGTACAGTGTCT 210925 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 ||||||| || |||||| | |||| | |||||| || | || ||||||| || Sbjct 210924 CGAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCC 210865 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 || | ||| | ||| || ||||||||||| ||||| || ||||| | ||| || | Sbjct 210864 ACATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACA 210805 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 || | || | ||||| || || || || || || ||||| || ||| | | | Sbjct 210804 TGTCACGTGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATA 210745 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 |||| |||||| ||||| | ||||||||| | | |||| || |||||||| || |||| Sbjct 210744 CATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCT 210685 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 |||| | |||| || ||||| || || |||| || ||| || | | ||||| || | Sbjct 210684 GATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAA 210625 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTA 63549 | || || || || ||||| || ||| | || |||||| || || || | Sbjct 210624 TCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAA 210565 Query 63550 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTA 63609 |||| ||||| ||| || || | || || | |||| ||| |||||||| ||||| | Sbjct 210564 TTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAA 210505 Query 63610 TGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA---GTAGTTC 63666 | ||||| || |||| | || |||||||| |||| || |||| |||| | Sbjct 210504 TACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGCTG 210445 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 ||||| || | ||| || || || || ||||| | || ||||| | ||||| | Sbjct 210444 CCGCA---AACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTATG 210388 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 |||| || |||| || || || ||| || || | || || ||||| ||||||| Sbjct 210387 TCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGT 210328 Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846 |||| || | ||||||||| || || || |||||||| ||||| |||||| |||| Sbjct 210327 GCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGTTT 210268 Query 63847 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 | || ||||| ||||||||| ||| || || |||||||| || ||||||| || Sbjct 210267 TGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATTCAG 210213 >seq5733 Length=11217 Score = 127 bits (140), Expect = 3e-24 Identities = 185/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || || || ||||||||||| || ||||| | ||| | ||||| Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || ||||| ||||| ||||| ||||||||||| || ||||| || |||| || || Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| ||||| || || ||||| || | | | || ||| | ||| Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGC- 2517 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| || | ||||| || |||||||| ||||| || |||| || Sbjct 2518 CT-TCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACG 2576 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| |||||||| || || Sbjct 2577 TTTCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629690361099360