Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq5733 111 1e-19 >seq2 Length=295332 Score = 114 bits (126), Expect = 1e-20 Identities = 207/299 (69%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 38095 TTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 |||||| || | ||||| ||||||| |||| | ||||||||||| | || || | | Sbjct 210770 TTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCATGGTTCGAGGTATATGGCAAA 210711 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 ||||| |||| ||| | || ||||||| | ||||| ||||||| || || | || Sbjct 210710 AGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCGGGCTGTGTTGTTGTACACTCG 210651 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | ||| ||||| | || || || | ||||| | || || || || || ||||| || Sbjct 210650 CAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGC 210591 Query 38274 TCGTATATTACTTATC-GACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATT 38332 || ||| | | | | || || ||||| ||||| |||||| || | || || | Sbjct 210590 GCGAATA-CAGTGAACATTCAGCCCAATTCCGCCTGCTGATTTTGAAATCAGCGCACACT 210532 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAA 38391 | |||| ||||||| | |||||||| ||||| || || || | ||| | ||||||| Sbjct 210531 GCTTTAGCGTATCATAGATACCTTCAATACTATCGTCAGACATGGTTAGCAGAAAACAA 210473 >seq5733 Length=11217 Score = 111 bits (122), Expect = 1e-19 Identities = 289/440 (66%), Gaps = 3/440 (1%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || || ||||| || ||||| | || | ||| || ||||| || || ||||| ||| Sbjct 2153 ACCTTGTCACAGCCCAACTCCAGCAGCAAACGATCGGCCACGAACTCAATGTACTGCGAC 2212 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | | ||||||||||| | | || ||||| | || |||||||| || | Sbjct 2213 ATCAGATCGCAATTCATACCGAGCATGTCGACCGGCAGGGCTTTCGTCAAAAATTCTTGC 2272 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || |||||||||| || || ||| | ||||| || ||| |||| Sbjct 2273 TCGATCACAACCGCATCACGAATGATGTCCGTCACGCGCTCCTTCGAGGGTTTCTGTACC 2332 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 | | || ||||| | || ||||| || || || | |||||||| | || || Sbjct 2333 AGGTACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGC 2392 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 || || || || || | ||| ||||||| || || || || | ||| || || || ||| Sbjct 2393 TCGTTCGAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCA 2452 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA--- 11788 || ||| ||||| || || || || || ||||| || || || | ||| ||| Sbjct 2453 AAGCTACCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAG 2512 Query 11789 TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC 11848 | |||| ||||| || ||||| || ||||| || || ||||| |||||||| | Sbjct 2513 TTGGCCTTCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGC 2572 Query 11849 ATTGTTTCTATAGCGTTAAA 11868 | ||||| || || || || Sbjct 2573 AACGTTTCAATGGCATTGAA 2592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468430146277280