Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 475 5e-129 seq5733 109 7e-19 >seq2 Length=295332 Score = 475 bits (526), Expect = 5e-129 Identities = 1232/1857 (66%), Gaps = 38/1857 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || || || || || | ||| ||||| ||||| || | || | |||| ||||| ||| Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAA 211994 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || || ||| || ||| ||| |||| || |||| || || || | ||||| | Sbjct 211993 TGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGAT 211934 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| || || | || ||||||||||| ||| || ||| | |||||| Sbjct 211933 TGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAGATTTCC 211874 Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGA 65095 || | ||||| || | || | | | |||| ||||| |||| ||| || | ||||| Sbjct 211873 CACACTGTTTTGTACAGGTCACGGA-TCTCTTTTGGAATTGTTTCTATGCTTTGGATGGA 211815 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 |||| || | || || | ||||| || || || ||| | || | || | Sbjct 211814 TCCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAG 211755 Query 65156 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 65215 | || |||||||| | || || || || || || || ||||| || | ||| | || Sbjct 211754 ATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATA 211695 Query 65216 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 65275 || || || ||||| || | ||||||||| || ||||| ||||| || ||||| || Sbjct 211694 AACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGC 211635 Query 65276 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 65335 |||||||| || |||| | ||| ||| | || |||| || || || ||||| Sbjct 211634 GGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTT 211575 Query 65336 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 65395 || |||| ||||| ||||||| |||| | |||| | Sbjct 211574 TAACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATAC 211515 Query 65396 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 65454 || || || | | || |||| |||| || ||||| || || ||| || |||| | Sbjct 211514 GCCTTTGCTTACCGGACT-TCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACT 211456 Query 65455 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 65514 | |||||||| || | ||||| || ||||||||||| || || | | ||| || | || Sbjct 211455 CGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTT 211396 Query 65515 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 65574 | || || ||| || | ||||| | | ||| || || || || | ||||| | Sbjct 211395 GGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCA 211336 Query 65575 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 65634 |||| || || || || || || | | | |||||| | || || || | ||||| | Sbjct 211335 CACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGT 211276 Query 65635 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 65691 | || ||||| || ||||| || ||||| | | ||||| ||| | | || ||||| | Sbjct 211275 AGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAAT--CTTAG-CGACTTCCTTAA 211219 Query 65692 GTTTGAGAAAATCAAATCGCTCATCTAT---TACAAACATGTTCAATGCAACAGATGCCA 65748 | || | |||||| | || ||| | ||| |||||||| | || | || |||| Sbjct 211218 GCTTTACAAAATCGTAAGTCTTGTCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCA 211159 Query 65749 GATTACAAACGGCTA---CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 65805 ||||||| || || | | || || | || | || | || ||||| ||||| | | Sbjct 211158 GATTACACACTGCAATTTCGTCTTTCG-ATGAG--TACTCTACAATCTCTGTGCACAAGT 211102 Query 65806 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 65865 || ||||| ||||| || | ||| |||||||| || || || || |||||||| | Sbjct 211101 TAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGT 211042 Query 65866 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 65925 | || || | || || ||||| | ||| ||||| || || || | ||| | | Sbjct 211041 ACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCT 210982 Query 65926 GAGCCTTTA-TTATAGATTTGTATC-TCTTTTCTCTTTCGTATAGTGTATACAATCGTTC 65983 | ||| ||| || | || | | ||| || | || | ||||| | || |||| | || Sbjct 210981 GTGCCCTTACTTGTCGAAT-GAATCGTCCCTCCT-TCTCGTAACGCGTGTACAGTGTCTC 210924 Query 65984 GAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 66043 |||||| || |||||| | |||| |||||||| || | || ||||||| ||| Sbjct 210923 GAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCA 210864 Query 66044 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA 66103 | | ||| | ||| || ||||||||||| ||||| || ||||| | ||| || | | Sbjct 210863 CATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCG-TAGA-AC 210806 Query 66104 ATCTCTGGTTCTATGT---TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || || || | | | ||||| || || || || || || ||||| || ||| | | Sbjct 210805 ATGTCACGTGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAA 210747 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | |||| |||||| ||||| | ||||||||| | | |||| || |||||||| || || Sbjct 210746 TACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACC 210687 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 |||||| | |||| || ||||| || || |||| || ||| || | | || || || Sbjct 210686 CTGATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGA 210627 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 | || || || || ||||| || |||| | || |||||| || || || Sbjct 210626 AATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCC 210567 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 ||||| ||||| ||| || || | || || | |||| |||||||||||| || || Sbjct 210566 AATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTC 210507 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC---TAGT 66457 |||||||| || |||| | || |||||||| |||| || |||| ||| Sbjct 210506 AATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGC 210447 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 | ||||| || | ||| || || || || ||||| | || ||||| | ||||| Sbjct 210446 TGCCGCA---AACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTA 210390 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 ||||| || |||| || || || ||| || || | || || ||||| ||||| Sbjct 210389 TGTCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACAT 210330 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||| || | |||||| ||||| || || |||||||| ||||| |||||| || Sbjct 210329 GTGCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGT 210270 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||| || ||||| ||||||||| ||| || || |||||||| || |||| || || Sbjct 210269 TTTGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATTCAG 210213 Score = 93.3 bits (102), Expect = 6e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 66803 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGC 66862 |||| ||||||||||||||||||| || || || ||||||| || || || | || || Sbjct 209782 AAATTGTTTTTTTGTTTCTTTGTGCAGGTTAGAAACGGCTAGTCGCGCCGCCAGGATCGC 209723 Query 66863 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 66922 |||||| | ||| | || || |||| || ||| |||| || |||||| |||| | || Sbjct 209722 ATAATCAGCATGATCGGTCGTCAAAGTAGCAGCTGTTTCAGCAGCCAGATTGTCGAGCTC 209663 Query 66923 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 66963 | ||| ||||| || ||| | || | || ||||||| Sbjct 209662 TTGCGTCGTTACACCTGAATAGAGCCCGTTTATGACCTTCA 209622 >seq5733 Length=11217 Score = 109 bits (120), Expect = 7e-19 Identities = 181/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 || ||||||| || || || |||||||| || || ||||| | ||| | ||||| Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 || ||||| ||||| ||||| ||||||||||| || ||||| || |||| ||||| Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 36325 || ||||| || ||||| || |||||||| || | | | || ||| | ||| Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGC- 2517 Query 36326 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 36380 || || || ||||| || | ||||| || |||||||| ||||| || |||| | Sbjct 2518 CT-TCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACG 2576 Query 36381 TCTCTATAGCATTAAAGAG 36399 | || || ||||| || || Sbjct 2577 TTTCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658039832640080