Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq5733 100 3e-16 seq3723 95.1 1e-14 >seq2 Length=295332 Score = 123 bits (136), Expect = 2e-23 Identities = 682/1080 (63%), Gaps = 32/1080 (3%) Strand=Plus/Minus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 || |||||||| | ||| | ||||| || || ||||| |||||||||||||| Sbjct 212077 ACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTC 212018 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAG-TAGGGTCGGC 152839 | || | ||||||||| | || | ||||| | ||| |||| || | || ||||| Sbjct 212017 AATCCCATCTTCCAGCCGTAGAAATGGATCGACGTGAGCTT-GCCATAGTTCGGCTCGGC 211959 Query 152840 CATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899 | || | ||| |||||||| ||||||||| ||||| |||| ||| || ||||| | Sbjct 211958 TACGTGTATGTTGAACGATTGTGATTGATCAATGAATGCACCTCGATCGGCAGCCATTTT 211899 Query 152900 GAT-CATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAA 152958 || |||| ||| ||| || |||||| | ||| ||||||| | | Sbjct 211898 AATGCATGTTTTTACCG----------AGATTTCCCACACTGTTTTGTACAGGTCACGGA 211849 Query 152959 TGTTGTCGGGAATTTCATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTCC 153018 | | | |||||| |||||| || ||||| || | || ||| | ||| Sbjct 211848 TCTCTTTTGGAATTGTTTCTATGCTTTGGATGGATCCATTATTGGACAAGATGTTGTTCT 211789 Query 153019 GCATA-CTACTTGTGTACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTGACA 153077 |||| | | | |||| || || | ||||| | | | | |||| || Sbjct 211788 TCATATCGAGAT-CCCACAGCCCCATCGCAGTCAGATCTTGCAGGAGATGATGGTTCACC 211730 Query 153078 ACTTGAAATTCGCCCGACAATACACGTC--TCAAAAACAAATTACTGTGAAACGGTTCAA 153135 || || || ||||||||||| ||||||| | | |||| | |||| |||| || | Sbjct 211729 ACCTGGAACTCGCCCGACAACACACGTCGATTATAAAC-GTTCGATGTG-TACGGCTCGA 211672 Query 153136 ACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCA 153195 | ||||| ||||| | |||||| || || | || |||||||| |||| ||| | Sbjct 211671 AAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCCAAAAGTA 211612 Query 153196 ACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAACG 153255 | |||||||| | |||||| ||| ||| || || || | | ||||| ||||| Sbjct 211611 ATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTTCCATAGAT 211552 Query 153256 AAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGG 153315 || ||| | ||||||| ||||| || |||| |||| ||| | || || Sbjct 211551 CCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGACTTCCTT 211492 Query 153316 CAAACGTGCTATACGG--CTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGC 153373 || |||| ||||| | | || | || | | |||| || || ||||| | Sbjct 211491 CATACGTCTCGTACGGACCGTCCCGTTCG--GCTAACTCGCAACTCGCTTCCAGCGCACC 211434 Query 153374 ATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGG 153433 || || | ||||| | || |||| ||||| ||| | ||||| ||||||| Sbjct 211433 ATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTACGG 211374 Query 153434 TATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATG 153493 ||||| | | ||||||||||||| |||||| | || || || ||||| | || Sbjct 211373 ATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATGGGCCTGTG 211314 Query 153494 GCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATT 153553 |||||| ||||| || || | || |||||| | ||| ||||| ||||| || Sbjct 211313 GCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTGATATCGATTATTTTGTT 211254 Query 153554 TAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGT------ 153607 | | | | ||| || | || | | | | |||||| | || Sbjct 211253 CAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAAAATCGTAAGTCTTGTC 211194 Query 153608 TCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTC 153667 | || | || | |||| | ||| ||||| |||| || || || ||| ||||||| Sbjct 211193 TGTCTTTACGA---ACATGTTTAGGGCGATCGAAGCCAGATTACACACTGCAATTTCGTC 211137 Query 153668 GGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATT 153727 | | || | ||| || || | ||||| || ||| ||||| ||| ||| Sbjct 211136 TTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGTGCCAACATT 211077 Query 153728 ACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 |||||||||||| || || || || |||||||| ||||| || ||| ||| ||||| Sbjct 211076 CTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTC 211017 >seq5733 Length=11217 Score = 100 bits (110), Expect = 3e-16 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTT-CCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGG 52590 |||| || |||| || ||| ||||| || || |||| || |||||| |||| ||| Sbjct 2591 TCAATGCCATTGA-AACGTTGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACTGG 2533 Query 52591 ATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGT 52650 ||| | | | || |||| |||| ||||||| | || |||||||| || ||||| Sbjct 2532 ATCTCGAGCAAGAAGGCCAACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGAAGGC 2473 Query 52651 GTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCC 52709 | || || ||||| ||||| || || || | |||| || | ||| | | ||||| Sbjct 2472 ATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCC-TGATGCC 2414 Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGC 52769 || || ||||| |||||| |||| ||||||||||||||| ||||| || ||||| Sbjct 2413 GGGACTGACGTTCTCGAACGAGCTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTGC 2354 Query 52770 GTG 52772 || Sbjct 2353 CTG 2351 >seq3723 Length=15797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || |||||||| || || | ||||| || || ||||| || || Sbjct 4045 GTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCG 4104 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| |||||||| || || || || || ||||| ||| ||| || Sbjct 4105 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTC 4164 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | ||||| ||||||| || | ||||||||||| | |||| Sbjct 4165 ACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTT 4224 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 4225 TTCACGAAAATCTGCAT 4241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495963782670400