Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 459 4e-124 seq5733 122 1e-22 >seq2 Length=295332 Score = 459 bits (508), Expect = 4e-124 Identities = 1227/1856 (66%), Gaps = 39/1856 (2%) Strand=Plus/Minus Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAAT 70882 |||||| || || | ||| |||||||| || || | || | |||| ||||| |||| Sbjct 212051 CGGCTTG-GTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAAT 211993 Query 70883 GCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTT 70942 | || ||| || ||| |||| | || ||||||| ||| || || | ||| || || Sbjct 211992 GGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGATT 211933 Query 70943 GATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCC 71002 |||| ||||| || || | || ||||||||||| ||| || ||| | ||||||| Sbjct 211932 GATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAGATTTCCC 211873 Query 71003 AAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGAT 71058 | | ||||| || | || | | | |||| ||||| |||| ||| || | |||||| Sbjct 211872 ACACTGTTTTGTACAGGTCACGGA-TCTCTTTTGGAATTGTTTCTATGCTTTGGATGGAT 211814 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 ||| || | | || | || || || || || ||| | || | || | | Sbjct 211813 CCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAGA 211754 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 || ||||||||| | || || || || || || || ||||| || | ||| | ||| Sbjct 211753 TCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAA 211694 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 | || || ||||| || | |||||||| || ||||| ||||| || ||||| || Sbjct 211693 ACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCG 211634 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298 |||||||| || |||| | || ||| | || || || | || || |||||| Sbjct 211633 GTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTT 211574 Query 71299 AGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358 | |||| ||||| ||||||| ||| | | | Sbjct 211573 AACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACG 211514 Query 71359 CCGTTACT-AGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTC 71417 || || || | || | |||| |||| || ||||| || || || |||||||| || Sbjct 211513 CCTTTGCTTACCGGACT-TCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTC 211455 Query 71418 ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTG 71477 |||||||| || | || ||||| ||||||||||| || || | | ||| || | ||| Sbjct 211454 GCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTG 211395 Query 71478 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 71537 || || ||| || | ||||| | | ||| || || || || | ||||| || Sbjct 211394 GGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCAC 211335 Query 71538 GCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATA 71597 || || || || || ||||| | | | ||||| | || || || | ||||| || Sbjct 211334 ACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTA 211275 Query 71598 ATTAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAG 71654 || ||||| || ||||| || ||||| | | || || ||| | | || ||||| || Sbjct 211274 GTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAAT--CTTAG-CGACTTCCTTAAG 211218 Query 71655 TTTGAGAAAATC--AAATCTC--CCATCTATTACAAACACGTTCAAGGCAACAGATGCCA 71710 || | |||||| || ||| | ||| |||| |||| ||| | ||| | || |||| Sbjct 211217 CTTTACAAAATCGTAAGTCTTGTCTGTCT-TTACGAACATGTTTAGGGCGATCGAAGCCA 211159 Query 71711 GATTACAAACGGCTA---CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGAT 71767 ||||||| || || | | || || | || | || | || ||| || ||||| | | Sbjct 211158 GATTACACACTGCAATTTCGTCTTTCG-ATGAG--TACTCTACAATCTCTGTGCACAAGT 211102 Query 71768 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 71827 || ||||| ||||| || | ||| |||||||| || || || || |||||||| | Sbjct 211101 TAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGT 211042 Query 71828 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 71887 | || ||| |||| || ||||| | ||| ||||| || || || | ||| | | Sbjct 211041 ACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCT 210982 Query 71888 GAGCCTTTATTATATTCTTGTATC-TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCG 71946 | ||| ||| | || ||| || | || | ||||| | || || | | ||| Sbjct 210981 GTGCCCTTACTTGTCGAATGAATCGTCCCTCCT-TCTCGTAACGCGTGTACAGTGTCTCG 210923 Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 ||||| || ||||||| | | || |||||||| || | || ||||||| |||| Sbjct 210922 AACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCAC 210863 Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 72066 | | | | | | ||| ||||||||||| ||||| || ||||| | ||| || | | | Sbjct 210862 ATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCG-TAGA-ACA 210805 Query 72067 TCTCTGGTTCTATGC---TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | || || | | || ||||| || || || || || || ||||| || ||| | | Sbjct 210804 TGTCACGTGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAAT 210746 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | |||| |||||| ||||| | ||||||||| | | ||||||| |||||||| || ||| Sbjct 210745 ACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCC 210686 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | |||| || ||||| || || |||| || ||| || | | || || || Sbjct 210685 TGATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAA 210626 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 || || || || ||||| || |||| | || |||||| | || || || Sbjct 210625 ATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCA 210566 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 72363 ||||| ||||| ||| || || | || || | |||| |||||||||||| || || Sbjct 210565 ATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCA 210506 Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTT 72420 |||||||| || |||| | || |||||||| |||| || ||| | ||| | Sbjct 210505 ATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGCT 210446 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 |||| ||| | ||| || || || || ||||| | || || || | ||||| Sbjct 210445 GCCGC---AAACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTAT 210389 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 ||||| || |||| || || || |||||| || | ||| || ||||| ||||| Sbjct 210388 GTCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATG 210329 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| || | |||||| ||||| || || |||||||| ||||| |||||| ||| Sbjct 210328 TGCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGTT 210269 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 || || ||||| ||||||||| ||| || || |||||||| || ||||||| || Sbjct 210268 TTGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATTCAG 210213 >seq5733 Length=11217 Score = 122 bits (134), Expect = 1e-22 Identities = 184/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| || || || ||||||||||| || || || | ||| | ||||| Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || ||||| ||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||||| ||||| || |||||||| || | | | || ||| | ||| Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGC- 2517 Query 42233 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 || || || ||||| || | ||||| || |||||||| ||||| || |||| || Sbjct 2518 CT-TCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACG 2576 Query 42288 TTTCTATGGCATTAAAGAG 42306 |||| |||||||| || || Sbjct 2577 TTTCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671003613103120