Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 178 1e-39 seq5733 109 6e-19 seq3723 86.0 6e-12 >seq2 Length=295332 Score = 178 bits (196), Expect = 1e-39 Identities = 830/1299 (64%), Gaps = 44/1299 (3%) Strand=Plus/Minus Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTC--TCAAAAACAAATTACTGTGAAA 156549 |||| || || || || ||||||||||| ||||||| | | |||| | |||| | Sbjct 211737 GGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGA-TGTGTA- 211680 Query 156550 CGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGC 156609 ||| || || ||||| |||||| | |||||| || || | || |||||||| || Sbjct 211679 CGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGC 211620 Query 156610 CACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTC 156669 || ||| ||||||||||| | ||||| ||| ||| ||| ||| |||| | ||||| Sbjct 211619 CAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTT 211560 Query 156670 CCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTT 156729 ||||| |||||| || | ||||||| ||||| || |||| |||| ||| | Sbjct 211559 CCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGG 211500 Query 156730 GCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTCG 156787 || || || |||| || || | | | | || | ||| |||| || || Sbjct 211499 ACTTCCTTCATACGTCTCGTACGG--ACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCC 211442 Query 156788 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 156847 |||||| ||| || | |||||| ||||||| ||||| ||| | ||||| Sbjct 211441 AGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTT 211382 Query 156848 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATG 156907 ||||||| ||||| | || ||||||||||||| |||||| | || || || ||| Sbjct 211381 TCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATG 211322 Query 156908 GGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA--GGGTAGAAATTGCGATCAA 156965 || | |||||||| ||||| || || | | || || ||| | ||| ||| | Sbjct 211321 GGCCTGTGGCGCATGTTAGAGCGCTTCGC--CTCCGGTACTGGATAGTAGTTGATATCGA 211264 Query 156966 TAATTTTATTCAAACTATCCACTAC-ATGTT--TGACCACAGTGTGCAATAGTTGAAAAT 157022 | ||||| |||| | | | || || || ||| | | || || ||||| Sbjct 211263 TTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTA---CAAAAT 211207 Query 157023 CAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGG 157079 | ||| | || | || | | | || | ||| ||||| || |||||||| || | Sbjct 211206 CGTAAGTCTTGTCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTG 211147 Query 157080 CAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 157139 || ||||||| || | || | ||| || || | ||||| || ||| ||||| Sbjct 211146 CAATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGG 211087 Query 157140 ATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTG 157199 || ||| |||||||||||| || ||||| || |||||||| | ||| |||||| Sbjct 211086 TGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTA 211027 Query 157200 TGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATTTGCT 157259 ||| ||||| | || ||| ||||| |||| || | | || || || Sbjct 211026 CGCCCGTTTCCACCTGCGATTCAATGAT----TGCATACCACAAATCCTGTGCCCTTACT 210971 Query 157260 CG-CGA---AACTGGCCTTTATCCTCGTAATGTTTGTACCAGTAT-TCAAAGTCATCACC 157314 | ||| || | || | | ||||||| | |||| |||| | || || || ||||| Sbjct 210970 TGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTA-CAGTGTCTCGAACTCTTCACC 210912 Query 157315 ATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTC 157374 | || || | | |||||| |||| ||| ||||| | ||| || |||| | Sbjct 210911 CCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGC 210852 Query 157375 TTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTT 157434 || || ||||||||||| | ||| || | ||| ||||||| | || ||||| || Sbjct 210851 CTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACG 210792 Query 157435 GGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCA 157494 || || |||| ||||| || | | || || | | || | |||||| Sbjct 210791 CACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCA 210732 Query 157495 CGGTTCAACGTACACTGCTTGGGCTCCTTTTCG---CTTGCCACCTTGATCCACGTGACG 157551 ||||| | ||| | || ||||| ||| |||||||| |||||||| | || Sbjct 210731 TGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCG 210672 Query 157552 CACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT--- 157608 | | || || | ||||||||||| |||| || ||| | | | |||||||| Sbjct 210671 GGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGCC 210612 Query 157609 --AGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCAATACCGCCG 157666 ||| | || || | | | |||| | | || || |||| ||||| ||||| Sbjct 210611 TGAGA-TGTACGTTCCCTTCG----CGCGAATACAGTGAACATTCAGCCCAATTCCGCCT 210557 Query 157667 CCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGAATGCTATCG 157726 | ||| || |||| || || | |||| || | |||||| || ||| |||||| Sbjct 210556 GCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCG 210497 Query 157727 CTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGA 157765 |||||| | |||||||| || || ||| ||| Sbjct 210496 TCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGA 210458 >seq5733 Length=11217 Score = 109 bits (120), Expect = 6e-19 Identities = 160/221 (72%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 50353 GTGCGTAAA----AAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTT 50407 ||||||||| |||| || |||||| |||| |||| | ||| || | |||| Sbjct 2569 GTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACTGGATCTCGAGCAAGAAGGCCAACTT 2510 Query 50408 TGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTG 50467 |||| |||||| | ||||||||||| || ||||| | || || ||||||||||| Sbjct 2509 TGGC-GAACGTGTCGTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCTTTG 2451 Query 50468 CAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAG 50526 | ||||| || | | || || | | ||| | ||||| || || ||||| |||||| Sbjct 2450 CCGCCATTTTCTGGCTCAAGAAGCGT-GGCCTGATGCCGGGACTGACGTTCTCGAACGAG 2392 Query 50527 TTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567 |||||||||||||||||||| ||||| |||||||| || Sbjct 2391 CTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTGCCTG 2351 >seq3723 Length=15797 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | |||||||| || || |||||||| || | ||||| Sbjct 4027 CGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCA 4086 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || || || || || || |||| ||||| |||||||| || || || || || ||| Sbjct 4087 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 4146 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | ||| | |||||||| || || || |||| || | Sbjct 4147 TCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATG 4206 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | ||||| ||||| || ||||| Sbjct 4207 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506911970415840