Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1063 205 1e-47 seq5733 150 3e-31 seq2 145 1e-29 seq319 134 2e-26 seq78 118 2e-21 >seq1063 Length=32748 Score = 205 bits (226), Expect = 1e-47 Identities = 393/573 (69%), Gaps = 16/573 (3%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 || ||| | || ||||| || || || || || | || ||||||||||| || ||| | Sbjct 26472 TTACGGAAGAAAATGACACCCGCACGCGGTCCACGCAGCGTCTTGTGCGTCGTCGTGCTG 26413 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || | ||| ||||| |||||| || || || | || | || ||||| |||| Sbjct 26412 ACCACGTCCGCGTACTCGAAGGGGGATGGTATCACACCAGCGGCTACCAGGCCCGAAATG 26353 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 ||||| || || || | ||| | | || | | ||||||||| ||||| ||| | Sbjct 26352 TGTGCCATGTCCGCGAACAGATATGCCCCATTTTGGTTGGCAATCTCCCGGAAGCGTTTG 26293 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 || |||| || || | ||||| | | ||||| ||||| | | | |||||||| | | Sbjct 26292 TAATCCAGGCAGCGCGAGTAGCATGAGATACCGGCAATGATCACCTTCGGTTTGAACAAA 26233 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || | || | | |||| |||| |||| | || || | || | ||||| ||| Sbjct 26232 CGTGCCGTTTCCTCCATTTTGTCATAATCGATCAACCCCGTATCGGGGTTAACCTTATAC 26173 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATCCG 127449 ||||||||||||||||||| || || ||||| | ||| |||| ||| ||| Sbjct 26172 GGCATGCTTTCGAAAAAGATGGACGTGGCGGAAATTTTTTTCGTCTGCGTCATGAAGCCG 26113 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||| || ||||| |||||||||||||| || |||||||| | ||||||||| | || Sbjct 26112 TGCGTAAGATGGCCACCGTCGGGCAGATCCAGACCCATGATGCGACCGTGCGGCTCAATC 26053 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC-ACACACTCC 127568 | | ||||| ||||| ||||||||| || ||||| |||||||| || ||| || Sbjct 26052 AACGCGGTGTAGACGGCGAAGTTGGCCGGTGATCCCGAATACGGTTGGACGTTACA-GCC 25994 Query 127569 CCATTCGGACTCGTTCAAATTGAACGC-TCTGAGACATCGCTGCTGTGCTAGCAGTTCGA 127627 ||| || | ||| | | | || || || || |||| || ||||||||||||| Sbjct 25993 CCACTCCTCCGGGTTTAGGCGGTATGCTTCCAAGGCA-CGCTTTTGAGCTAGCAGTTCGA 25935 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTATC 127660 | || ||| | || ||||| || ||||||| Sbjct 25934 TCTCGTCAATATATTCATTACCTCCGTAGTATC 25902 >seq5733 Length=11217 Score = 150 bits (166), Expect = 3e-31 Identities = 239/340 (70%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| || || ||||| || ||||||||||| ||||| ||||| ||||| || ||| Sbjct 2496 GTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGG 2437 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 ||||||||||| || || ||||| ||||||||| | |||||| | || || || ||| Sbjct 2436 CTCAAGAAGCGTGGCCTGATGCCGGGACTGACGTTCTCGAACGAGCTGATTTCGCGCGAC 2377 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || || || ||||| ||||||||| || |||| ||| || ||| || | || Sbjct 2376 GAAGGACTGCACTGCGACTTTGCCTGCCTGATGTT---CAAGTACCTG-GTACAGA---- 2325 Query 125610 AGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 | || ||| | | | || | |||| | ||||| || ||| || ||||| Sbjct 2324 --AACCCTCGAAGGAGCGCGTGACGGACATCATTCGTGATGCGGTTGTGATCGAGCAAGA 2267 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||| | || || |||| |||||| |||| | || ||||| ||| | || |||| | Sbjct 2266 ATTTTTGACGAAAGCCCTGCCGGTCGACATGCTCGGTATGAATTGCGATCTGATGTCGCA 2207 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 |||||| ||||| ||||| |||||| | ||| |||||| Sbjct 2206 GTACATTGAGTTCGTGGCCGATCGTTTGCTGCTGGAGTTG 2167 Score = 129 bits (142), Expect = 9e-25 Identities = 196/278 (71%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || ||||| ||||| || |||||||||||||| || |||||| || | || | Sbjct 2972 AGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTCGATCTATCGAAGGACATGAAAGACT 2913 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTC 125153 |||| ||| ||||||| |||||| || | || |||||| | | |||||| Sbjct 2912 GGGAA--TCG-----CTGAAACCGAGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTC 2860 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| |||||||| ||||| ||||| || ||| || ||| ||| ||| ||| | Sbjct 2859 TTTGCCGCATCCGATGGTATCGTTAACGAGAACCTGGTGGAACGCTTCAGTCAGGAGGTA 2800 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 | | || | ||||||||||| || ||||| ||| || || |||||| Sbjct 2799 CAGGTAACGGAAGCACGCTGCTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGC 2740 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 || |||||||| || || |||| ||||||||| || Sbjct 2739 GAGATGTACTCGCTGCTAATCGACACGTACATTCGTGA 2702 >seq2 Length=295332 Score = 145 bits (160), Expect = 1e-29 Identities = 620/966 (64%), Gaps = 24/966 (2%) Strand=Plus/Plus Query 96405 TCGGCCATTGTAGACGATCGCGATTTTCAATCTTTGACCTATTTTGCATACAAGACGCTA 96464 |||||||| | |||||||||||||| || | ||| |||| | ||| || | Sbjct 210219 TCGGCCATCATTTACGATCGCGATTTTGGATAC---AACTACTTTGGGTTCAAAACATTG 210275 Query 96465 GAGCGTACCTATCTGATAAAGCTGGCCGACGGTAAGATTTGTGAACGAGTGCAGCACATG 96524 || || ||||| || | ||| | | | ||||||||| |||||| |||||||||| Sbjct 210276 GAACGGTCCTATTTGTTGAAGAT---CAAGGGTAAGATTGTTGAACGTCCGCAGCACATG 210332 Query 96525 TACATGAGGACCGCGCTCGGTATTCACGGTCGGGATATTGAATCGGTAATCGAAACGTAC 96584 | ||| | ||| ||||||| || ||| || || || | | ||||| || ||| Sbjct 210333 TTGATGCGCGTTGCGATCGGTATACATGGTGAAGACATCGATGCAGCCATCGAGACATAC 210392 Query 96585 AATCTACTCTCGAACCGCTACTATGTACATTCGACGCCTACTCTGTGTCATGCGGCAACG 96644 || | || ||| | || || | | ||| | | || || ||| | || || ||| Sbjct 210393 AACTTGCTTTCGGAGCGTTATTTTACCCATGCCTCACCGACCATGTTTGCGGCAGCTACG 210452 Query 96645 AATCGTTC-CAACTATGCCTCTTGCTATCTGCTCGAAC--TCAAAGAGGACAGCATCGGT 96701 | ||| | || || | | ||||| | |||||| ||| | || || || || | Sbjct 210453 CAACGTCCACAGCTGT-CATCTTGTTTTCTGCT--AACCATGTCTGACGATAGTATTGAA 210509 Query 96702 GGCGT-TATGGACACGCTAAAGGACGCGGCCACCATTTCAAAACACTGTGGCGGTGTAGG 96760 || | |||| | ||||||||| | || ||||||||| ||||| | || Sbjct 210510 GGTATCTATG-ATACGCTAAAGCAGTGTGCGCTGATTTCAAAATCAGCAGGCGGAATTGG 210568 Query 96761 TTTGCATGTGCACAAGTTGCGCTGTAAA--AACTCTACGATTCATTCAACAAACGGCAAC 96818 || |||| ||| | ||| || ||| ||| ||| || | ||||| | Sbjct 210569 GCTGAATGTTCACTGTATTCGCGCGAAGGGAACG-TACATCTCAGGCA-CGAACGGGATT 210626 Query 96819 GCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAG 96878 | | || | || || ||||| || ||||||| | | ||||| || ||| Sbjct 210627 TCGAACGGGTTGGTACCGATGCTGCGAGTGTACAACAACACAGCCCGATATGTGGATCAG 210686 Query 96879 GGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTT 96938 || ||||| ||||| || || ||| | ||| | ||| | ||||| ||||| | || || Sbjct 210687 GGTGGCAACAAACGACCGGGAGCTTTTGCCATATACCTCGAACCATGGCATGGTGATGTA 210746 Query 96939 TTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTG 96998 || || ||| | || || |||||| | ||| || |||| || || | ||| || Sbjct 210747 TTCGAGTTTCTGGATCTGAAGAAAAACACCGGCAAGGAGGAGGTGCGTGCACGTGACATG 210806 Query 96999 TTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC--- 97055 || || || | ||| | || ||| |||| ||||| || || || | | | | Sbjct 210807 TTCTACGCTTTGTGGATACCGGATCTGTTTATGAAACGGGTA---GAGGCTAACGAAATG 210863 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||||| || |||||||| || | || || || | || ||||| |||||||| Sbjct 210864 TGGAGTCTGATGTGCCCTCACGATTGTCCTGGGTTGGCGGAAACTTGGGGTGAAGAGTTC 210923 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| | ||||||| |||||| | ||||| |||| | | ||| ||| |||| Sbjct 210924 GAGACACTGTACACGCGTTACGAGAAGGAGGGACGATTCATTCGACAAGTAAGGGCACAG 210983 Query 97176 GAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTAC 97235 || ||||| | || ||| | | ||||| || || || ||||| || || ||| Sbjct 210984 GATTTGTGGTATGCAATCATTGAATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTAC 211043 Query 97236 AAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAAT 97295 |||||| | ||||| || ||||| |||| | | |||||||| ||| |||| || Sbjct 211044 AAGGATGCATGCAATCGTAAAAGCAATCAACAGAATGTTGGCACCATAAAGTGCTCTAAC 211103 Query 97296 CTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCA 97355 ||||||| || |||||||||||| | || ||||| | ||||| || |||||| Sbjct 211104 TTGTGCACAGAGATTGTAGAGTACTCATCGAAAGACGAAATTGCAGTGTGTAATCTGGCT 211163 Query 97356 TCGGTC 97361 ||| || Sbjct 211164 TCGATC 211169 Score = 118 bits (130), Expect = 2e-21 Identities = 197/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 97977 ATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGA 98036 ||| ||| ||| ||||| ||||| |||| ||| | || || ||||| | || Sbjct 211797 ATCTTGTCCAATAATGGATCCATCCAAAGCATAGAAACAATTCCAAAAGAGATCCGTGAC 211856 Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 | ||||| || || ||||| || || || || || | ||||||||||| || Sbjct 211857 CTGTACAAAACAGTGTGGGAAATCTCGGTAAAAACATGCATTAAAATGGCTGCCGATCGA 211916 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| | |||||| || ||||||||||| | |||| |||||||| | ||| | Sbjct 211917 GGTGCATTCATTGATCAATCACAATCGTTCAACATACACGTAGCCGAGCCGAACTATGGC 211976 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | || ||||| || || |||| ||||| | ||| | |||||||||||||| ||| Sbjct 211977 AAGCTCACGTCGATCCATTTCTACGGCTGGAAGATGGGATTGAAGACGGGCATGTATTAT 212036 Query 98217 CTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || | || ||| ||||| ||||| || | ||||||||||||| Sbjct 212037 TTGCGCACCAAGCCGGCCGTTAATGCGATCCAATTTACGGTGGAC 212081 >seq319 Length=60246 Score = 134 bits (148), Expect = 2e-26 Identities = 350/533 (66%), Gaps = 3/533 (1%) Strand=Plus/Minus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| || ||| ||| ||||| | |||| Sbjct 44405 CCGTCGAACCCTCGATGTTCCTGTACATGATGGCGTTTATGCTGACGTCGGTCGTAGAGC 44346 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 ||||||| | | ||| |||||||||| ||| | ||||| || |||| || | |||| Sbjct 44345 AGGCGTTCTTTCTCTACAAAGCGTGCACAGTCGATCATGGATATTCGCACGAAATTTGCC 44286 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 ||||| ||||| | |||||||| || | |||||| ||| || || || | Sbjct 44285 TTAACATCGAGCAGTATCAGGACATCAAAAAGCAGGTCCAGGTGACGACCTCAACCTTCC 44226 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 |||||||||| | || | ||||||| || | | |||| | || || || Sbjct 44225 ATCAGTGGAATAACATTGCGATGTATGTGGTCCCTATCGTGCTGGCTCTGTTTCTCGGTG 44166 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 ||| || ||||| ||| | ||| | || | || || | |||||| || Sbjct 44165 CCTGGTCGGACAGGCGAGGTCGCAAGTTACCGCTAATCCTGGGGCTTATCGGTAAATTCA 44106 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAG---AGCTGGCCCGTAGAGTATATAA 50153 | | |||| ||| | || |||| || | | ||||| || ||||| || | Sbjct 44105 TCTACTCGATCATGATCGTAGTGAACACTCGTATGCCTTCGTGGCCGGTGGAGTACATCA 44046 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 ||||||| ||| | | ||||||| | | ||||| || || | |||| || ||| | | Sbjct 44045 TCTACACAGCAACGATCCCGAGTGTATTGACCGGTGCAGACATTGCCATCTTTGCATCAT 43986 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 ||||||| ||||| | ||| | ||| || || | ||||| ||||| | || Sbjct 43985 GCTTTGCATACATCTCGGATATAACGAGCGTAGAAGAACGCACCCTACGCATTACGATAC 43926 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTG 50326 ||||||| ||||| || || ||||| | ||| || || |||| | |||| Sbjct 43925 TGGATGCAACTTACCTCAGTACCATGCCGATCGGAGTCGCACTCGGGAATGTG 43873 >seq78 Length=100849 Score = 118 bits (130), Expect = 2e-21 Identities = 241/350 (69%), Gaps = 6/350 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || ||||| ||||| || |||||| | || | ||| | ||||| | Sbjct 92535 GGTGATCTAGGCCCAGTTTACGGCTTTCAGTGGCGCCATTTTGGCGCAAAGTACAAAACA 92594 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||| | ||| || || | || ||||| | || || ||| |||| | | ||| ||| Sbjct 92595 TGCCACGAC-GATTACACAGGACAGGGAATCGACCAGTTGGCAGA-AGTGATTCACAAAA 92652 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || | |||||| ||| | | ||| | ||| || | ||||||||| | || | | Sbjct 92653 TAAAAAACAATCCTTATGATCGTCGAATCATCATGAGCGCTTGGAATCCTTCCGACATTC 92712 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTAC-GATGGCAAA 70303 | | ||||| ||||| || |||||||||||||| || |||| | | | ||||| | Sbjct 92713 CCAATATGGCCCTACCGCCTTGTCACTGTTTGGCACAATTTTT-TGTTGCTGATGGGGAG 92771 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 |||| ||| ||||||||| | ||||| | || | |||||||| ||||||||| Sbjct 92772 CTGTCTTGCCAGATGTATCAGCGATCAGCCGATGTCGGTTTGGGTGTACCTTTTAACATT 92831 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 |||||||| || || | || || ||||| || || | || || ||||| Sbjct 92832 GCAAGCTACTCCTTGCTAACCCATATGATCGCACATGTCACTGGACTGAA 92881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740909487515120