Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2169 125 2e-23 seq5733 98.7 2e-15 >seq2169 Length=21917 Score = 125 bits (138), Expect = 2e-23 Identities = 225/326 (69%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 238561 AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAA 238620 |||| |||| ||| |||| ||||| || ||||| || |||||| | || ||||| Sbjct 3657 AGCTGGAGACGGCCAAAACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGC 3716 Query 238621 GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA 238680 | |||||| ||||| | || | || ||||| ||||| || |||||||| || |||| Sbjct 3717 GGGAAGGCAAGATGCACGGCTTTCTGCGGATGTACTGGGCGAAGAAGATACTGGAGTGGA 3776 Query 238681 CTAGATCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGAACTC 238739 | | | | || |||| || || || | | || |||||||||||| ||| || Sbjct 3777 CGAAAACACCGGAGGAGGCGCTC-GAGACGGCGATCTATCTGAACGATCGGTACAGCCTG 3835 Query 238740 GACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT 238799 || || ||||| ||||| ||||| || || |||||||| || ||| |||||||| Sbjct 3836 GATGGGCGCGATCCGAACGGGTACGTCGGGTGCATGTGGTCGATCGCGGGAATACACGAT 3895 Query 238800 AGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACT 238859 || |||| ||| | || ||||| ||| || | |||||||| ||||| || Sbjct 3896 CAGGGATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGTTACATGAACTATGAGGGCTGC 3955 Query 238860 AAGAAAAAATTTGATGTAAATGCTTT 238885 ||| |||||| | || ||||| || Sbjct 3956 AAGCGTAAATTTAACGTCAATGCGTT 3981 >seq5733 Length=11217 Score = 98.7 bits (108), Expect = 2e-15 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 268750 ACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGA 268809 |||||| | ||||| || ||||| || ||||| || ||||| || | ||| | | ||| Sbjct 2974 ACAGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTCGATCTATCGAAGGACATGAAAGA 2915 Query 268810 TTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| || | ||||| ||| | || || || | | ||||| || ||||| Sbjct 2914 CTGGGAATCGCTGAAACCGAGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTTGC 2855 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | ||||||||||||||||| || || || || ||| |||| ||||||||| | Sbjct 2854 CGCATCCGATGGTATCGTTAACGAGAACCTGGTGGAACGCTTCAGTCAGGAGGTACAGGT 2795 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 | ||||| | || |||||||| || || ||||| || |||||| | || ||||| Sbjct 2794 AACGGAAGCACGCTGCTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGAT 2735 Query 268990 GTACAGTCTATTAATAGATACTTATAT 269016 |||| || |||| || || || || Sbjct 2734 GTACTCGCTGCTAATCGACACGTACAT 2708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151159973456696