Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq73 138 1e-27 >seq73 Length=101597 Score = 138 bits (152), Expect = 1e-27 Identities = 198/277 (71%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || || || ||||| || ||||| || | ||||||||| || ||| | ||||||| Sbjct 46562 CCGGTAGATCCGAAACCTCCTGCACCGCGTTCCGTATCCGTAAGCGACGGAAGCTCTTCC 46621 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 | ||| || | || |||||||| | || || || || ||||| |||| || Sbjct 46622 AAATCCGGATAAGCTATTTTTTCGCAGATAAATTGTGCGATACGATCGCCTTTCTTGACA 46681 Query 5624 TCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGG 5681 |||||||| || ||||| |||||||||||| || || ||||| || |||||||| Sbjct 46682 TCGAAATC--TGCCTCCGAATGGTTGAACAGCACAACACCAACGTTACCACGGTAGTCCT 46739 Query 5682 CGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAG 5741 | || | ||||| || || || |||||||| | ||| |||||||| || || ||||||| Sbjct 46740 CATCAACGACGCCGGCTCCAACATCGATGAAATTCTTCACCGCCAGTCCAGAACGGGGAG 46799 Query 5742 CCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTG 5778 | || || || ||||| || || || | ||| | ||| Sbjct 46800 CTACCCGTCCATAGCATCCTTCCGGTACCTGCACCTG 46836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429969690303344