Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1402 114 1e-20 seq3723 87.8 2e-12 >seq1402 Length=30251 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| | ||||| ||| |||||| ||||||||||| || | | Sbjct 9267 CCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 9208 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || |||||||||||||||||||| | | || | ||||||||||||| ||| Sbjct 9207 AGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 9148 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| ||| || ||| ||| | | | | || ||||| | | ||| | Sbjct 9147 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 9088 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 9087 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 9037 >seq3723 Length=15797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| || | | | || | |||||||||||||| ||| || | Sbjct 4051 TCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 4110 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | ||||||||| || || ||| | | Sbjct 4111 ATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTT 4170 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | | ||| ||| | ||| ||||| || |||||||| |||||||| Sbjct 4171 TCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACG 4230 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 4231 AAAATCTGCAT 4241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421168224308162