Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq631 89.7 3e-13 seq8836 87.8 9e-13 seq270 87.8 9e-13 seq101 86.0 3e-12 seq8049 84.2 1e-11 >seq631 Length=47871 Score = 89.7 bits (98), Expect = 3e-13 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| | ||| | | | |||| | || |||||||||| |||||||||||||||||||| Sbjct 1193 TAAAATAAAGTAACAGTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 1252 Query 11500 CGACGCTCTRACCAACTGAGCTA 11522 ||||||||| ||||||||||||| Sbjct 1253 CGACGCTCTAACCAACTGAGCTA 1275 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1811 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1870 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 1871 CTGAGCTA 1878 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3667 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3726 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 3727 TGAGCTATGGAGCCG 3741 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2711 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2770 Query 11516 TGAGCTA 11522 ||||||| Sbjct 2771 TGAGCTA 2777 >seq8836 Length=8062 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||||| ||| ||||| | || |||||||||| ||||||||||||||||| Sbjct 5289 TTCATAAAAAA-CAATGCTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTA 5347 Query 11497 GCACGACGCTCTRACCAACTGAGCTA 11522 |||||||||||| |||| |||||||| Sbjct 5348 GCACGACGCTCTAACCAGCTGAGCTA 5373 >seq270 Length=66146 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 15056 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14997 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 14996 TGAGCTATGGAGCCG 14982 >seq101 Length=87702 Score = 86.0 bits (94), Expect = 3e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||||||||||||||||||||||||||| || Sbjct 48764 AAGTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 48705 Query 11512 CAACTGAGCTA 11522 || |||||||| Sbjct 48704 CAGCTGAGCTA 48694 >seq8049 Length=5948 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2233 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2292 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 2293 TGAGCTATGGAGCCG 2307 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 4033 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4092 Query 11516 TGAGCTA 11522 ||||||| Sbjct 4093 TGAGCTA 4099 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261439692934312