Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq48 129 5e-25 seq3723 116 3e-21 seq1402 89.7 5e-13 >seq48 Length=116589 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | ||||||||||| || || ||||| || | ||| || ||| | Sbjct 116556 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 116497 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| || | || |||||||| || ||| | ||||| || | ||||||||||||| Sbjct 116496 AGAGTACGTCCG--TCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAG 116439 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || ||||| | || || ||||| ||| ||| ||||| | | |||| Sbjct 116438 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGA 116379 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | || | ||||||||| || ||||| || || ||||| ||||||||||| || Sbjct 116378 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATTCT 116327 >seq3723 Length=15797 Score = 116 bits (128), Expect = 3e-21 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TG 94849 ||||| ||||| || | ||||||||||| || | ||| || | | ||||||| | Sbjct 4026 TCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGT--CCGATAGTGTGCGG 4083 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 |||||||||||| || ||| | ||||| | | ||||||||||| || || || || Sbjct 4084 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCC 4143 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | || |||||||| || ||| ||||| | | ||||| |||| ||| Sbjct 4144 TTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTG 4203 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||||| || || || || |||||||| || ||||||||| || Sbjct 4204 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGATT 4245 >seq1402 Length=30251 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||| ||| | || || ||||| || | ||| || ||| || |||| || ||| Sbjct 9250 CACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACA--GTGTGCGACCGTCC 9193 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || ||| ||||||| | | |||||||| || || || || || || || Sbjct 9192 TCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCC 9133 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||| || ||| || || | | | ||||| |||| || ||||| Sbjct 9132 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTC 9073 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| || ||||||||||| Sbjct 9072 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448200633970320