Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5527 185 1e-42 seq621 167 4e-37 >seq5527 Length=11465 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || ||||||||||| || || || ||||| || ||| Sbjct 9688 GCCAAGCGTCATCGTAAAGTGTTGCGTGATAACATCCAGGGTATTACGAAGCCCGCCATC 9629 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || || |||||| |||| ||| || |||| || |||| Sbjct 9628 CGCCGTCTGGCTCGCCGTGGAGGTGTGAAGCGTATCTCCGGACTGATCTACGAGGAGACC 9569 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| ||| |||| |||||| | || || || Sbjct 9568 CGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCGGTAACGTACACGGAA 9509 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| |||||||| ||||||| || |||| || || ||| Sbjct 9508 CACGCCAAGCGCAAGACCGTCACTGCCATGGATGTCGTCTACGCTCTGAAGCGCCAGGGC 9449 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 9448 CGCACGCTGTACGGTTTTGGAGGTTAA 9422 >seq621 Length=46124 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | || || ||||||||||| || || || ||||| || ||| Sbjct 20196 GCAAAGCGTCATCGTAAGGTGCTCCGCGATAACATCCAGGGTATTACGAAGCCCGCCATC 20137 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| || |||||| | |||||| || |||| || || | Sbjct 20136 CGCCGTCTGGCTCGCCGTGGTGGTGTGAAGCGTATTTCTGGACTGATCTACGAGGAAACC 20077 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| ||||| || ||| ||||| Sbjct 20076 CGCGGCGTGCTGAAGGTATTCCTGGAGAACGTGATCCGCGATGCCGTCACCTACACCGAA 20017 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| || || | |||||| | || || || |||| || || ||| Sbjct 20016 CACGCCAAGCGTAAGACCGTAACGGCGATGGATGTGGTGTACGCTCTGAAGCGCCAGGGC 19957 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| ||| | ||| Sbjct 19956 CGTACGCTGTACGGTTTCGGAGGCTAA 19930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060422970266