Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq9121 107 3e-18 >seq9121 Length=5000 Score = 107 bits (118), Expect = 3e-18 Identities = 359/551 (65%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 || || || ||||| | || |||||||| || || | || || || || || || Sbjct 4310 GAAATTTACAATCTGGCCGCACAAAGTCACGTCAAGATATCGTTCGATTTGAGCGAATAC 4251 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 || | | || ||||| | || || || | | || || || |||||| | ||| Sbjct 4250 ACGGCCGAGGTAGATGCCGTCGGTACGCTACGTTTGCTGGACGCCATTCGTACAGTCGGA 4191 Query 193767 ATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT--GGTGTTC 193824 ||||||| ||| ||| |||| || ||||| || ||| ||||| || |||| | Sbjct 4190 CAGGAGAAAACTGTCCGCTTCTACCAAGCATCCACGTCCGAGCTGTACGGAAAGGTGGCC 4131 Query 193825 TAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGG-TGTAGCA 193883 || ||| || | |||| || ||||| ||||||| || || || | ||| || Sbjct 4130 GAGACACCGCAGAACGAGAAG--ACTCCATTCTATCCACGGTCGCCGTACGCCTGT-GCG 4074 Query 193884 AAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGT 193943 ||| |||| || || ||||| | | || ||||| || | || | | |||| | Sbjct 4073 AAGATGTACGGATACTGGATTGTGATAAACTATCGCGAAGCGTACGATATGTTCGCTTGC 4014 Query 193944 TCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAG 194003 ||| ||||| || |||||||| || || | | || || | ||||| || || || Sbjct 4013 AATGGGATTCTGTTTAATCACGAGTCGCCGCGCCGGGGGGAAAATTTTGTCACACGCAAA 3954 Query 194004 ATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAG-AAGATT--CTTTATCTTGGT 194060 || || | | | ||||| || | ||| ||| |||| | || | || || Sbjct 3953 ATAACCCGCTCGGTGGCGAAGATATCGCTCGGA---CAGCAAGAATACCTGGAGCTGGGC 3897 Query 194061 AATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTA 194120 ||||| || | || | || ||||| ||||| || ||||| || |||||||||||| | Sbjct 3896 AATCTGGATTCGAAACGTGACTGGGGCCACGCCAAAGATTACGTCGAAGCGATGTGGCTC 3837 Query 194121 ATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTT 194180 ||| |||| ||||| | || || |||| ||| ||||| || || ||| | | || || Sbjct 3836 ATGATGCAGCAGGACAAGCCGGAAGATTTTGTAATTGCCACGGGCGAAACGCACTCGGTG 3777 Query 194181 AGAGACTTTGT 194191 | || ||||| Sbjct 3776 CGGGAGTTTGT 3766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807392053660720