Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 484 8e-132 seq5733 127 3e-24 >seq2 Length=295332 Score = 484 bits (536), Expect = 8e-132 Identities = 1236/1858 (67%), Gaps = 40/1858 (2%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || || || || | ||| ||||| ||||| || | || | |||| ||||| ||| Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAA 211994 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || || ||| || ||| ||| |||| || |||| || || || | ||||| | Sbjct 211993 TGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGAT 211934 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||||| || || | || ||||||||||| ||| || ||| | |||||| Sbjct 211933 TGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAGATTTCC 211874 Query 62196 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGA 62251 || | ||||| || | || | | | |||| ||||| |||| ||| || | ||||| Sbjct 211873 CACACTGTTTTGTACAGGTCACGGA-TCTCTTTTGGAATTGTTTCTATGCTTTGGATGGA 211815 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| || | || || | ||||| || || || ||| | || | || | Sbjct 211814 TCCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAG 211755 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | || |||||||| | || || || || || || || ||||| || | ||| | || Sbjct 211754 ATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATA 211695 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 || || || ||||| || | |||||||| || ||||| ||||| || ||||| || Sbjct 211694 AACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGC 211635 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62491 |||||||| || |||| | ||| ||| | || |||| || || || ||||| Sbjct 211634 GGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTT 211575 Query 62492 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 62551 || |||| ||||| ||||||| |||| | |||| | Sbjct 211574 TAACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATAC 211515 Query 62552 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 62610 || || || | | || |||| |||| || ||||| || || ||| || |||| | Sbjct 211514 GCCTTTGCTTACCGGACT-TCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACT 211456 Query 62611 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62670 | |||||||| || | ||||| || ||||||||||| || || | | ||| || | || Sbjct 211455 CGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTT 211396 Query 62671 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62730 | || || ||| || | ||||| | | ||| || || || || | ||||| | Sbjct 211395 GGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCA 211336 Query 62731 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62790 |||| || || || || || || | | | |||||| | || || || | ||||| | Sbjct 211335 CACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGT 211276 Query 62791 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 62847 | || ||||| || ||||| || ||||| | | ||||| ||| | | || ||||| | Sbjct 211275 AGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAAT--CTTAG-CGACTTCCTTAA 211219 Query 62848 GTTTGAGAAAATC--AAATC--GCCCATCTATTACAAACATGTTCAAGGCAACAGATGCC 62903 | || | |||||| || || | | ||| |||| |||||||| | ||| | || ||| Sbjct 211218 GCTTTACAAAATCGTAAGTCTTGTCTGTCT-TTACGAACATGTTTAGGGCGATCGAAGCC 211160 Query 62904 AGATTACAAACGGCTA---CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62960 |||||||| || || | | || || | || | || | || ||||| ||||| | Sbjct 211159 AGATTACACACTGCAATTTCGTCTTTCG-ATGAG--TACTCTACAATCTCTGTGCACAAG 211103 Query 62961 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63020 ||| ||||| || || || | ||| |||||||| || || || || |||||||| Sbjct 211102 TTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTG 211043 Query 63021 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63080 || || || | || || ||||| | ||| ||||| || || || | ||| | | Sbjct 211042 TACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCC 210983 Query 63081 CGAGCCTTTA-TTATAGATTTGTATC-TCCTTTCTCTTTCGTATAGTGTATACAATCGTT 63138 | ||| ||| || | || | | ||| ||| | || | ||||| | || |||| | | Sbjct 210982 TGTGCCCTTACTTGTCGAAT-GAATCGTCCCTCCT-TCTCGTAACGCGTGTACAGTGTCT 210925 Query 63139 CGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 63198 ||||||| || |||||| | |||| |||||||| || | || ||||||| || Sbjct 210924 CGAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCC 210865 Query 63199 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63258 || | ||| | ||| || ||||||||||| ||||| || ||||| | ||| || | | Sbjct 210864 ACATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCG-TAGA-A 210807 Query 63259 GATCTCTGGTTCTATGT---TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 || || || | | | ||||| || || || || || || ||||| || ||| | | Sbjct 210806 CATGTCACGTGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGA 210748 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | |||| |||||| ||||| | ||||||||| | | |||| || |||||||| || | Sbjct 210747 ATACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCAC 210688 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 ||||||| | |||| || ||||| || || |||| || ||| || | | ||||| | Sbjct 210687 CCTGATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCG 210628 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63495 | || || || || || ||||| || |||| | || |||||| || || | Sbjct 210627 AAATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCC 210568 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | ||||| ||||| ||| || || | || || | |||| ||| ||||||||||| | Sbjct 210567 CAATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTT 210508 Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC---TAG 63612 | || ||||| || |||| | || |||||||| |||| || |||| ||| Sbjct 210507 CAATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAG 210448 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 | ||||| || | ||| || || || || ||||| | || ||||| | |||| Sbjct 210447 CTGCCGCA---AACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGT 210391 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | ||||| || |||| || || || ||| || || | || || ||||| |||| Sbjct 210390 ATGTCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACA 210331 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 ||||||| || | |||||| ||||| || || |||||||| ||||| |||||| | Sbjct 210330 TGTGCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATG 210271 Query 63793 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 |||| || ||||| ||||||||| ||| || || |||||||| || |||| || || Sbjct 210270 TTTTGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATTCAG 210213 >seq5733 Length=11217 Score = 127 bits (140), Expect = 3e-24 Identities = 185/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || ||||||| || || || ||||||||||| || ||||| | ||| || ||||| Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || ||||| ||||| ||||| ||||||||||| || ||||| || |||| || || Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || |||||||| ||||| || || ||||| || | | | || ||| | ||| Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGC- 2517 Query 33472 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 || || || ||||| || | ||||| || |||||||| ||||| || |||| || Sbjct 2518 CT-TCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACG 2576 Query 33527 TTTCTATGGCATTAAAGAG 33545 |||| |||||||| || || Sbjct 2577 TTTCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622821349091920