Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 253 5e-62 seq78 145 2e-29 >seq2 Length=295332 Score = 253 bits (280), Expect = 5e-62 Identities = 597/888 (67%), Gaps = 20/888 (2%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||| ||| | ||||||||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 210297 ATCAAGGGTAAGATTGTTGAACGTCCGCAGCACATGTTGATGCGCGTTGCGATCGGTATA 210356 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| | || | ||||| || || || ||||| || | || | ||| || Sbjct 210357 CATGGTGAAGACATCGATGCAGCCATCGAGACATACAACTTGCTTTCGGAGCGTTATTTT 210416 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACT-CGTAA--TCCACAGATGTCTTCT 363606 || || ||| | || || |||| ||| | | || || || ||||||| |||| ||| Sbjct 210417 ACCCATGCCTCACCGACCATGTT---TGCGGCAGCTACGCAACGTCCACAGCTGTCATCT 210473 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||||| |||| ||| |||||| || || ||||||| ||| || || ||| | Sbjct 210474 TGTTTTCTGCTAACCATGTCTGACGATAGTATTGAAGGTATCTATGATACGCTAAAGCAG 210533 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 ||||| || ||||| || |||||||||||||| || || | ||| | |||| | Sbjct 210534 TGTGCGCTGATTTCAAAATCAGCAGGCGGAATTGGGCTGAATG--TTCACTGTATTCGCG 210591 Query 363725 CACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | || | ||||| ||||| | ||||| ||||| ||| |||| || ||||| Sbjct 210592 CGAAGGGAACGTACATCTCAGGCACGAACGGGATT-TCGAACGGGTTGGTACCGATGCTG 210650 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || |||| |||| || || | || || || |||||||| || || || || Sbjct 210651 CGAGTGTACAACAACACAGCCCGATATGTGGATCAGGGTGGCAACAAACGACCGGGAGCT 210710 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || ||||| || |||| ||| | || |||||||| || || |||| Sbjct 210711 TTTGCCATATACCTCGAACCATGGCATGGTGATGTATTCGAGTTTCTGGATCTGAAGAAA 210770 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||||| || || ||||| ||||||||||||| ||||||| || | ||| | | || Sbjct 210771 AACACCGGCAAGGAGGAGGTGCGTGCACGTGACATGTTCTACGCTTTGTGGATACCGGAT 210830 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAA-GAATTGGTCACTCT--TTTGCCCACACGAA 364020 | |||||||| || || ||||| ||| ||| || | ||| | ||||| ||||| Sbjct 210831 CTGTTTATGAAACGGGTAGAGGC---TAACGAAATGTGGAGTCTGATGTGCCCTCACGAT 210887 Query 364021 TGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 ||||| || | | || |||||||| || | | | || ||| || || Sbjct 210888 TGTCCTGGGTTGGCGGAAACTTGGGGTGAAGAGTTCGAGACACTGTACACGCGTTACGAG 210947 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAA-TTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 |||||| | | || | ||||| | |||||| | | |||| ||| ||||| || Sbjct 210948 AAGGAGGG-ACGATTCATTCGACAAGTAAGGGCACAGGATTTGTGGTATGCAATCATTGA 211006 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 |||||| | || || || ||| |||||| ||||||| ||| | ||||| || || Sbjct 211007 ATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAATCGTAAAAG 211066 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 ||| || ||| | |||| || || || ||| | || || |||||| | || || Sbjct 211067 CAATCAACAGAATGTTGGCACCATAAAGTGCTCTAACTTGTGCACAGAGATTGTAGAGTA 211126 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | | | ||||| | ||| || ||||| || || |||||||| || Sbjct 211127 CTCATCGAAAGACGAAATTGCAGTGTGTAATCTGGCTTCGATCGCCCT 211174 Score = 93.3 bits (102), Expect = 1e-13 Identities = 259/395 (66%), Gaps = 12/395 (3%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| || || || || | || ||||| |||| ||||| ||| Sbjct 211620 GCTCCGATGCCGACCGCTTCAACGGCGCAAATATTGGGCAACAATGAGTCTTTCGAGCCG 211679 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | ||| || ||||| || || || | || || || || | ||| || || | Sbjct 211680 TACACATCGAACGTTTATAATCGACGTGTGTTGTCGGGCGAGTTCCAGGTGGTGAACCAT 211739 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCG----GGCTGTGGGGTGACAGCATGAAGAACTA 364925 | || | | ||||| ||| ||| ||||||||| | | ||||||||| | Sbjct 211740 CATCTCCTGCAAGATCT----GACTGCGATGGGGCTGTGGGATCTCGATATGAAGAACAA 211795 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGA--TCTGAAG 364983 ||| | || |||||| || | || | ||| | | ||||| |||| || | Sbjct 211796 CATCTTGTCCAATAATGGATCCATCCAAAGCATAGAAACAATTCCAAAAGAGATCCGTGA 211855 Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGAT 365043 ||| | ||||||| || |||||||| || | ||| |||| | ||||| |||||| Sbjct 211856 CCTGT--ACAAAACAGTGTGGGAAATCTCGGTAAAAACATGCATTAAAATGGCTGCCGAT 211913 Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103 || ||||| || || ||| || ||||| ||| || | | | |||| | || Sbjct 211914 CGAGGTGCATTCATTGATCAATCACAATCGTTCAACATACACGTAGCCGAGCCGAACTAT 211973 Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | |||||| || || || ||||||||||| ||||| Sbjct 211974 GGCAAGCTCACGTCGATCCATTTCTACGGCTGGAA 212008 >seq78 Length=100849 Score = 145 bits (160), Expect = 2e-29 Identities = 223/310 (72%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||||||||| || ||||||||||| ||||| |||||||| ||||| ||| | |||||||| Sbjct 92534 AGGTGATCTAGGCCCAGTTTACGGCTTTCAGTGGCGCCATTTTGGCGCAAAGTACAAAAC 92593 Query 111548 CATGC-ACGACTCATATGATTCACAGGGAACTGATCAATTA-CAGAATGTCATTGATCAA 111605 |||| ||||| || |||||||| || || || ||||| || ||| | || Sbjct 92594 -ATGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAA-GTGATTCACAAA 92651 Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATG-CATT 111664 || || ||||| || | |||||| || || ||||| || ||||| || | |||| Sbjct 92652 ATAAAAAACAATCCTTATGATCGTCGAATCATCATGAGCGCTTGGAATCCTTCCGACATT 92711 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGAT 111724 || | |||| || || || ||||| | || || |||| ||| || ||| Sbjct 92712 CCCAATA-TGGCCCTACCGCCTTGTCACTGTTTGGCACAATTTTTTGTTGCTGATGGGGA 92770 Query 111725 GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATAT 111784 ||| || ||||| |||||||||||||| || ||| | ||| | ||||| || ||||| || Sbjct 92771 GCTGTCTTGCCAGATGTATCAGCGATCAGCCGATGTCGGTTTGGGTGTACCTTTTAACAT 92830 Query 111785 TGCAAGTTAC 111794 |||||| ||| Sbjct 92831 TGCAAGCTAC 92840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303083707238684