Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 >seq2 Length=295332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 877/1396 (63%), Gaps = 51/1396 (4%) Strand=Plus/Minus Query 132261 ACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCAT-GTAG 132319 |||||||||| || || ||||| ||||||||||| || || | || |||||||| | || Sbjct 211680 ACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAG 211621 Query 132320 GCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCAT-TTGCCGTTTAAGCTCGTCCCA 132378 ||| | ||||||||| || | ||||| | || || || | ||||| |||| |||| Sbjct 211620 CCAA-AAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAA-CTCGGCCCA 211563 Query 132379 GTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACT 132438 |||||| ||||| ||| || | ||||||| || ||||||| || | || Sbjct 211562 GTTCCATAGATCCGTCGGTT---CCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCT 211506 Query 132439 TGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTG 132498 | | ||| ||| | ||| | ||||| | |||| || ||| | || ||| Sbjct 211505 TACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGC 211446 Query 132499 ACTCAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTG 132558 ||| |||||||| ||||| || || | |||| | ||||| | || | || Sbjct 211445 TTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTC 211386 Query 132559 ACTGTCGTAGGGCAA---ATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGAT 132615 || ||||| || | ||||||| ||| |||||||| | || || | ||||| Sbjct 211385 GCTTTCGTACGGATAGCGCATTAAAAT---GAATGCATCGGCCATACCTTGCACACCGAT 211329 Query 132616 ACCGATGGGTCTATGTTTAAAATTCGA-TACTTGTGCGCTAGTCAGCGGATAAAAGTTTT 132674 || ||||| || || | || || ||| | | || | ||||| |||| Sbjct 211328 TCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGT-ACTGGATAGTAGTTGA 211270 Query 132675 TGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAA 132734 | || |||||||| || |||||| || |||| |||| |||| | ||| | ||| Sbjct 211269 TATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAA 211210 Query 132735 AGTC-AAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAATTG 132793 | || |||| || ||| | | || | || || | ||| ||||| |||| ||| Sbjct 211209 AATCGTAAGTCTT--GTC--TGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGATTA 211154 Query 132794 CATACGGCTGTCTCTTTATTATCGCT--ATACTGTACGATTTCTGCACACAAATTA---C 132848 || || || | || | | ||| | |||| ||| || |||| ||||| ||| | Sbjct 211153 CACACTGCAATTTCGT--CTTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGC 211096 Query 132849 TGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGT-TATCTTTATGC 132907 ||| || || | || | ||||||| |||| || || | | ||| || | | Sbjct 211095 ACTTT---ATGGTGCCAACATTCTGTTGATTGCTTTT-ACGATTGCATGCATCCTTGTAC 211040 Query 132908 AACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAAC 132967 | ||| ||||| | || ||||| ||||| ||| || ||| | ||| Sbjct 211039 AGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCTGT 210980 Query 132968 GCCAAAATTTGTTCTTTAAACTTGCCCTGAGTCTCGTAACTTTCGTATAATCGCTCAAAT 133027 ||| | |||| | || |||| ||||||||| ||| | | ||| || Sbjct 210979 GCCCTTACTTGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAAC 210920 Query 133028 TCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTT 133087 ||||| || | || ||| || ||||| |||| ||| ||||||| ||| || Sbjct 210919 TCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATT 210860 Query 133088 TCTCCTGCGCTC-ACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATC 133146 || || ||| |||| |||||| |||| ||| |||||| || | || | || Sbjct 210859 TCGTTAGC-CTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTC 210801 Query 133147 GCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTC 133206 || || || || ||| ||| | ||| |||| |||| ||| || | || Sbjct 210800 ACGTGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATC 210741 Query 133207 TGCATGCCAAGGCTCGATATATACGGCCAAAGC-GCCTTTCCTT--TTACCTCCCTGATC 133263 ||||||| || |||| |||| ||| ||||| || || || || || |||||||| Sbjct 210740 ACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATC 210681 Query 133264 CACATGTCTAAGCATGCTGTTGAAGACACGCAATGCA--GGACCCAATCCTGCGGCAGTA 133321 ||||| || || ||||| | || |||| ||| || |||| || | | | Sbjct 210680 CACATATCGGGCTGTGTTGTTGTACACTCGCA--GCATCGGTACCAACCCGTTCGAAATC 210623 Query 133322 CCGTTGGTGGATTTGATTTTACTGTTAGC--GGCACGAATTTGAGAAACGTTAAGGCCTA 133379 ||||| ||| | || | ||| ||| | || ||||| ||| || || || | Sbjct 210622 CCGTTCGTGCCTGAGA-TGTAC-GTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAA 210565 Query 133380 TACCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTTTATAGATGCCATTGA 133439 | |||||| | ||| || |||| ||||| | || || || | |||||| || | | Sbjct 210564 TTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAA 210505 Query 133440 TGCTGTCTTCCTGGATGTTGAGCAAATAACACGACGACATCTGAGGCATTTTCATGCCAG 133499 | || || || ||| | |||| | |||| || |||| ||| || || | | | | Sbjct 210504 TACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGCTG 210445 Query 133500 AAGAAAACAAAGTGGGACTAGCGTGAGTAA---ACAGCTTTGATCGCATCAATCTGTAGG 133556 | ||||| || || || || |||| | ||| || | ||| |||| | Sbjct 210444 CCGCAAACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGA---AAGCAAGTTGTATG 210388 Query 133557 ACTCAATTGCGCTTTCAATGTCTTCACCATGAATTTGTAGCGCTACACGCATCAGCATAT 133616 ||| || || || |||||||||||||| || | ||| || ||||||| ||| | Sbjct 210387 TCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGT 210328 Query 133617 GTTGAGGTCGCTCCAC 133632 | || || || || || Sbjct 210327 GCTGCGGACGTTCAAC 210312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429851313625110