Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 233 2e-56 seq1402 150 2e-31 seq3723 125 7e-24 seq5733 113 4e-20 seq48 113 4e-20 seq1141 86.0 6e-12 >seq2 Length=295332 Score = 233 bits (258), Expect = 2e-56 Identities = 985/1526 (65%), Gaps = 72/1526 (5%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || ||||| |||||||| | ||||||||| || ||| ||||| || ||| | Sbjct 211738 TGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTAC 211679 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 || || |||||||| || ||||||| ||||| || || | ||||| ||||| ||| Sbjct 211678 GGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCC 211619 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | | ||||||||| || | |||||||| || | ||| |||| | |||| | | Sbjct 211618 AAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTTC 211559 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 ||||| ||||| | || |||||| |||||||| || | ||| | ||| | || Sbjct 211558 CATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGA 211499 Query 145295 CTGCCTTGAAAGGAACTGTA---ACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCC 145351 || |||| | | | ||| || | ||| || ||| | |||||||||||| ||| Sbjct 211498 CTTCCTTCATACGTCTCGTACGGACCGTCCCG---TTCGGCTAACTCGCAACTCGCTTCC 211442 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGA-GCAGCAT---CGCTTCATC 145407 || || || | ||||| || || ||| | |||||| |||| | || || || Sbjct 211441 AGCGCACCATAGTAAATGGTTTC--AAATAT--TTGTTGATTCAGCTTTTGGGCCTCTTC 211386 Query 145408 GCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| |||||||| ||||| | | || |||||||| | || || | || | || Sbjct 211385 GCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCC 211326 Query 145468 GATGGGCCGATGTTTCATGTT---GCTCATCCTCGCCG--ACTCGATAGGATATCGATTA 145522 ||||||| || |||||| || | || | ||| ||| ||||| | | ||| Sbjct 211325 AATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTA-GTTGAT-- 211269 Query 145523 CGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCA 145582 ||||| ||||| |||| || ||| || | ||| | | | | | |||| || Sbjct 211268 --ATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACA 211211 Query 145583 AAGTC--AAACCGAGCCTCGTC--AACGACCACACAGCTATTGACGGCGATCGACGCCAA 145638 || || || | | || ||| |||| || | || | ||||||||| |||| Sbjct 211210 AAATCGTAAGTCTTGTCT-GTCTTTACGAACA------TGTTTAGGGCGATCGAAGCCAG 211158 Query 145639 ATTACAAACTGCCGTCTCCTCGGCGTCGCT--GTATTGTACGATCTCGGCGCACAAATTG 145696 |||||| ||||| | || || ||| | ||| | ||| ||||| | |||||| || Sbjct 211157 ATTACACACTGCAATTTCGTC--TTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTA 211100 Query 145697 CTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAG 145756 || || ||||| || | ||| || ||||| ||||| | ||||| || |||||||| Sbjct 211099 GAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTAC 211040 Query 145757 AGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC 145816 ||||| |||||| |||| || |||||||||| || | ||| | ||| ||||| Sbjct 211039 AGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCTGT 210980 Query 145817 GCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAAC 145876 || | || || | | | || ||||| | ||||| | |||| || ||| ||| Sbjct 210979 GCCCTTACTTGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAAC 210920 Query 145877 GCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACG 145936 | ||| | || | || || ||||| | || || |||||||| ||| | Sbjct 210919 TCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATT 210860 Query 145937 CCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCG 145996 |||| || | || || | |||||||| ||| || | ||||| ||||| | || ||| Sbjct 210859 TCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCA 210800 Query 145997 CGCGCTTTGCA-ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT---ATAGAT 146052 || || ||| ||||| || ||||| ||||| || || | ||| ||| | Sbjct 210799 CGTGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAG-AAACTCGAATACA- 210743 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGT---TTGCCACCCTG 146109 || | ||||| ||||| | || | ||| | ||||| |||| ||||||||||| Sbjct 210742 -TCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTG 210684 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 ||||| | || | ||||||| | || |||| ||| || | | ||| | | | Sbjct 210683 ATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAAT 210624 Query 146170 GCCGTTCGT---AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCC 146226 |||||||| ||| || || || | ||| | || |||||||||| || Sbjct 210623 CCCGTTCGTGCCTGAG---ATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCC 210567 Query 146227 GAGACCGCCGCCGTACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGT 146285 | ||||| | | || || || ||| || || | ||||| || ||||| || | Sbjct 210566 AATTCCGCCTGCTGATTTTGAAATCAGC-GCACACTGCTTTAGCGTATCATAGATACCTT 210508 Query 146286 CAATGCTATCGCTTCGA-ATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTC 146344 |||| |||||| | || ||| |||||||| || || ||| ||| | |||| Sbjct 210507 CAATACTATCG-TCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTA 210449 Query 146345 CCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTC----ATCATCCG 146400 | |||| |||| ||||| || || ||||| | |||| | || Sbjct 210448 GCTGCCGCAAACATGGTCGGTGAGGCATGGGTAAA----ATAACGCTCCGAAAGCAAGTT 210393 Query 146401 ATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460 || || ||||| || | | ||||| || ||||| || || | || |||||||| | Sbjct 210392 GTATGTCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAA 210333 Query 146461 CATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCC 146518 |||||| || || || || | | | | | ||||| ||||||||| |||| ||| Sbjct 210332 CATGTGCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGT--TCC 210275 Query 146519 AGGGTTTTGTATCCGAAAAATTTGTA 146544 | |||||| | || || | ||||| Sbjct 210274 AATGTTTTGAACCCAAAGTAGTTGTA 210249 >seq1402 Length=30251 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | ||| |||||||| ||||||||||| ||| Sbjct 9268 GCCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 9209 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| |||||||| || || |||| | ||||||||| ||||| || Sbjct 9208 CAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGG 9149 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| ||| ||| | | ||| | ||||| | || ||||| Sbjct 9148 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 9089 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || || ||||| ||||| |||||||| Sbjct 9088 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 >seq3723 Length=15797 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| | ||| | ||| || ||||| ||||||||||| || Sbjct 4015 CCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGAT 4074 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||| || || ||| Sbjct 4075 AGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 4134 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | || || | | ||||| Sbjct 4135 ATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACC 4194 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | ||| || ||||| || ||||| |||||||||||||||| Sbjct 4195 TCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGA 4243 >seq5733 Length=11217 Score = 113 bits (124), Expect = 4e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 46063 CTGCTTAATGCGTTTGAA-CGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAA 46121 ||| | ||||| ||||| ||| |||||||||| ||||| | |||||||| |||| Sbjct 2595 CTGTTCAATGCCATTGAAACGT-TGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAA 2537 Query 46122 GTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGA 46181 |||||| |||| | || | || | ||| ||| | ||||| |||||| || || Sbjct 2536 CTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGA 2477 Query 46182 GGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCAT 46241 ||| |||| || || || ||||||||||| || | |||| | ||| | || Sbjct 2476 AGGCATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGAT 2417 Query 46242 GCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301 ||| || |||||||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 2416 GCCGGGACTGACGTTCTCGAACGAGCTGATTTCGCGCGACGAAGGACTGCACTGCGACTT 2357 Query 46302 TGCGTGTCT 46310 ||| || || Sbjct 2356 TGCCTGCCT 2348 >seq48 Length=116589 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || || || | |||||||||||| || |||||||| ||| | Sbjct 116556 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 116497 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| ||||||||||| || ||||| Sbjct 116496 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 116437 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || | | ||||| Sbjct 116436 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 116377 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 116376 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 >seq1141 Length=30375 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || || || || || | |||||||||||| || |||||||| ||| | Sbjct 30254 CCCCCGCGAAGTCGAAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 30313 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| ||||||||||| || ||||| Sbjct 30314 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 30373 Query 131128 AT 131129 || Sbjct 30374 AT 30375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471917441614080