Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4289 158 8e-34 seq1402 104 2e-17 >seq4289 Length=11692 Score = 158 bits (174), Expect = 8e-34 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| | ||||| |||||||||||| | || |||||||| ||||| ||||| Sbjct 2018 ATGGCTACCGTAAACGTGAATCGTAATGTGACCGATATCTTCTACCGTTACAAGATGCCT 2077 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| || ||||| |||||||| |||||||| || ||||| || || || |||||| Sbjct 2078 CGCATCAATGCTAAGGTAGAGGGTAAAGGAAACGGCATCAAAACGGTAATCGTGAACATG 2137 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || |||| ||| | || || ||||| ||||| || ||||| || || || ||| Sbjct 2138 GCCGAGGTGGCTAGAGCGATTGGTCGTCCTGCAACCTATCCAACGAAGTACTTTGGTTGC 2197 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||||||||| || || || || || || || Sbjct 2198 GAACTTGGCGCACAAACTCAATTCGACCATAA 2229 Score = 138 bits (152), Expect = 8e-28 Identities = 204/288 (71%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || |||||||| || || || ||||| | ||||||| |||||||| || || || Sbjct 2314 AATGAACGCTTCATTGTGAATGGCTCGCACGATGCTGCCAAACTGCAGGATTTGCTCGAT 2373 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || ||||| ||||||||||| || || | |||||||||||| || ||||| || | | Sbjct 2374 GGATTTATCCGCAAGTTTGTACTATGCCCGGAATGCGATAATCCTGAGACGGATTTGCTG 2433 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | |||| ||||| || ||||| |||||||||||||||| ||||| | Sbjct 2434 GTATCATCGAAGAAGGGTACCATTTCGCAGGGATGCAAAGCGTGCGGTTTTCATGGTCCG 2493 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAAAG---AC 6611 || || || ||||| | ||||| ||||| | ||||| ||||| || | || Sbjct 2494 CTTGAGGTAAACCACAAGGTGAACACGTTCATTATCAAGAA---CCCACCGAATGTGAAC 2550 Query 6612 CCTAGCACGCAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659 || || ||||| | |||| | | || | || ||| |||||||| Sbjct 2551 CCGGCCAGCCAGGGAGCGTCGCTGACTGAGGGTAAGCGTAGCAAGCGC 2598 >seq1402 Length=30251 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || || | ||||| ||||| ||| |||||| ||||| ||||| || ||| Sbjct 9267 CCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 9208 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| || || || || ||||| | ||| Sbjct 9207 AGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 9148 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || || ||| || || ||||||||||| || ||||| || || Sbjct 9147 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 9088 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 9087 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 9038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334881223984622