Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 475 4e-129 seq5733 109 7e-19 >seq2 Length=295332 Score = 475 bits (526), Expect = 4e-129 Identities = 1234/1858 (66%), Gaps = 40/1858 (2%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || || || || || | ||| ||||| ||||| || | || | |||| ||||| ||| Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAA 211994 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || || ||| || ||| ||| |||| || |||| || || || | ||||| | Sbjct 211993 TGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGAT 211934 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| ||||| || || | || ||||||||||| || || ||| | |||||| Sbjct 211933 TGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAGATTTCC 211874 Query 62051 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGA 62106 || | ||||| || | || | | | |||| ||||| |||| ||| || | ||||| Sbjct 211873 CACACTGTTTTGTACAGGTCACGGA-TCTCTTTTGGAATTGTTTCTATGCTTTGGATGGA 211815 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 |||| || | || || | ||||| || || || ||| | || | || | Sbjct 211814 TCCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAG 211755 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226 | || |||||||| | || || || || || || || ||||| || | ||| | || Sbjct 211754 ATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATA 211695 Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286 || || || ||||| || | ||||||||| || ||||| ||||| || ||||| || Sbjct 211694 AACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGC 211635 Query 62287 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62346 |||||||| || |||| | ||| ||| | || |||| || || || ||||| Sbjct 211634 GGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTT 211575 Query 62347 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 62406 || |||| ||||| ||||||| |||| | |||| | Sbjct 211574 TAACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATAC 211515 Query 62407 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 62465 || || || | | || |||| |||| || ||||| || || ||| || |||| | Sbjct 211514 GCCTTTGCTTACCGGACT-TCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACT 211456 Query 62466 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62525 | |||||||| || | ||||| || ||||||||||| || || | | ||| || | || Sbjct 211455 CGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTT 211396 Query 62526 GCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 62585 | || || ||| || | ||||| | | ||| || || || || | ||||| | Sbjct 211395 GGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCA 211336 Query 62586 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62645 |||| || || || || || || | | | |||||| | || || || | ||||| | Sbjct 211335 CACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGT 211276 Query 62646 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 62702 | || ||||| || ||||| || ||||| | | ||||| ||| | | || ||||| | Sbjct 211275 AGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAAT--CTTAG-CGACTTCCTTAA 211219 Query 62703 GTTTGAGAAAATC--AAATC--GCCCATCTATTACAAACATGTTCAATGCAACAGATGCC 62758 | || | |||||| || || | | ||| |||| |||||||| | || | || ||| Sbjct 211218 GCTTTACAAAATCGTAAGTCTTGTCTGTCT-TTACGAACATGTTTAGGGCGATCGAAGCC 211160 Query 62759 AGATTACAAACGGCTA---CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 |||||||| || || | | || || | || | || | || ||||| ||||| | Sbjct 211159 AGATTACACACTGCAATTTCGTCTTTCG-ATGAG--TACTCTACAATCTCTGTGCACAAG 211103 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 ||| ||||| ||||| || | ||| |||||||| || || || || |||||||| Sbjct 211102 TTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTG 211043 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935 || || || | || || ||||| | ||| ||||| || || || | ||| | | Sbjct 211042 TACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCC 210983 Query 62936 CGAGCCTTTA-TTATAGATTTGTATC-TCTTTTCTCTTTCGTATAGTGTATACAATCGTT 62993 | ||| ||| || | || | | ||| || | || | ||||| | || |||| | | Sbjct 210982 TGTGCCCTTACTTGTCGAAT-GAATCGTCCCTCCT-TCTCGTAACGCGTGTACAGTGTCT 210925 Query 62994 CGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACC 63053 ||||||| || |||||| | ||| |||||||| || | || ||||||| || Sbjct 210924 CGAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCC 210865 Query 63054 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63113 || | ||| | ||| || ||||||||||| ||||| || ||||| | ||| || | | Sbjct 210864 ACATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCG-TAGA-A 210807 Query 63114 GATCTCTGGTTCTATGT---TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 || || || | | | ||||| || || || || || || ||||| || ||| | | Sbjct 210806 CATGTCACGTGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGA 210748 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 | |||| |||||| ||||| | ||||||||| | | |||| || |||||||| || | Sbjct 210747 ATACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCAC 210688 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 ||||||| | |||| || ||||| || || |||| || ||| || | | || || | Sbjct 210687 CCTGATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCG 210628 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 | | || || || |||||||| || |||| | || |||||| || || | Sbjct 210627 AAATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCC 210568 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | ||||| ||||| ||| || || | || || | |||| |||||||||||| || | Sbjct 210567 CAATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTT 210508 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC---TAG 63467 | |||||||| || |||| | || |||||||| |||| || |||| ||| Sbjct 210507 CAATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAG 210448 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | ||||| || | ||| || || || || ||||| | || ||||| | |||| Sbjct 210447 CTGCCGCA---AACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGT 210391 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 | ||||| || |||| || || || ||| || || | || || ||||| |||| Sbjct 210390 ATGTCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACA 210331 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 ||||||| || | |||||| ||||| || || |||||||| ||||| |||||| | Sbjct 210330 TGTGCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATG 210271 Query 63648 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 |||| || ||||| ||||||||| ||| || || |||||||| || |||| || || Sbjct 210270 TTTTGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATTCAG 210213 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 |||| ||||||||||||||||||| || || || ||||||| || || || || || || Sbjct 209782 AAATTGTTTTTTTGTTTCTTTGTGCAGGTTAGAAACGGCTAGTCGCGCCGCCAGGATCGC 209723 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 |||||| | ||| | || || |||| || ||| |||| || |||||| |||| | || Sbjct 209722 ATAATCAGCATGATCGGTCGTCAAAGTAGCAGCTGTTTCAGCAGCCAGATTGTCGAGCTC 209663 Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCA 63974 | ||| |||||||| ||| | || | || ||||||| Sbjct 209662 TTGCGTCGTTACACCTGAATAGAGCCCGTTTATGACCTTCA 209622 >seq5733 Length=11217 Score = 109 bits (120), Expect = 7e-19 Identities = 181/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 32649 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 32708 || ||||||| || || || |||||||| || || ||||| | ||| | ||||| Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 32709 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 32768 || ||||| ||||| ||||| ||||||||||| || ||||| || |||| ||||| Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 32828 || ||||| || ||||| || |||||||| || | | | || ||| | ||| Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGC- 2517 Query 32829 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 32883 || || || ||||| || | ||||| || |||||||| ||||| || |||| | Sbjct 2518 CT-TCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACG 2576 Query 32884 TCTCTATAGCATTAAAGAG 32902 | || || ||||| || || Sbjct 2577 TTTCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633503990495200