Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2169 158 1e-33 seq13465 96.9 3e-15 >seq2169 Length=21917 Score = 158 bits (174), Expect = 1e-33 Identities = 323/471 (69%), Gaps = 12/471 (3%) Strand=Plus/Minus Query 50983 ACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTG 51042 |||||||| |||||||| |||||| | |||||||| || | ||| |||||||||||| Sbjct 3972 ACGTTAAATTTACGCTTGCAGCCCTCATAGTTCATGTAACGAATTTTGCCAAAAATTTCC 3913 Query 51043 CGTTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATT 51101 || || || | |||| ||||| | || || |||||||| || || || || Sbjct 3912 CGCTCCTTCCA-TCCCTGATCGTGTATTCCCGCGATCGACCACATGCACCCGACGTACCC 3854 Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 ||| |||||||| ||||||| |||||| ||||||| ||| | || || | | || Sbjct 3853 GTTCGGATCGCGCCCATCCAGGCTGTACCGATCGTTCAGATAGATCGCCGTCTCGAGCGC 3794 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 | || | | |||||| |||| || ||||| ||||||||||| |||| | || Sbjct 3793 CTCCTCCGGTGTTTTCGTCCACTCCAGTATCTTCTTCGCCCAGTACATCCGCAGAAAGCC 3734 Query 51222 GTGCATCTTGCC--CTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGA 51279 |||||||||||| | |||| | | |||| || ||||||||||||| |||||||| Sbjct 3733 GTGCATCTTGCCTTCCCGCACC--ATCTGCAGCTGGGCCGAGTTCCACAGATCGTCGTGC 3676 Query 51280 GTTTGGCAACTTGCCAGCTCTGTCAAATTGTAAATGTATGAGCGATGATCGTATTTGTGT 51339 |||| | | ||||||| | ||||| ||| || | ||| | || Sbjct 3675 GTTTTGGCCGTCTCCAGCTCCTCCCGGTTGTAGCAGTACACACGCTTATCCTTCCGATGG 3616 Query 51340 TGCTCGATCG-TTTCTTGAGCCCATTGTGGTGCGCCTTCAACACA--GTCGTAGCGGTCG 51396 | || | || |||| || ||||| || || |||| | || | ||||||| | | Sbjct 3615 TCGTCCAGCGTTTTCCTG-GCCCA--GTCGTACGCCCCCTTCAGATTGTCGTAGTTTTTG 3559 Query 51397 TTGTAGAAACAAAAATTGTCGGCCAGTTCGCGGCGTACCACGACTTCGTCG 51447 |||| || ||||| ||||| | |||||||||||| || | |||| ||| Sbjct 3558 TTGTGAAAGCAAAAGTTGTCCGACAGTTCGCGGCGCACGATCGCTTCCTCG 3508 >seq13465 Length=2195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||||| || |||||| | || || | || || | | || Sbjct 821 ATGCAGATCTTTGTTAAAACTTTAACGGGTAAAACGATGACCCTTGATGTTGTCGCTTCG 762 Query 25059 GACAC--TATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || | | | | || | || | ||||||| || ||||| ||| |||| |||| Sbjct 761 GAAACGGTTTTG-GACATTAAAA-ACAAAATCATGGAACGCGAAGGTATTGCACCAGACC 704 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||||||||||||||||||| ||||| || | ||| | | | ||||||| Sbjct 703 AGCAGCGTATTATTTTTGCCGGCAAACAGTTAGAGGAGGGTCGTATTATATCTGATTACA 644 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||| | | ||| ||| | ||| | ||||| Sbjct 643 ATATCCAACACGGATCGACGATGCATCTGGTGCT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433242645488030