Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5733 178 1e-39 seq5463 111 2e-19 seq10957 109 6e-19 >seq5733 Length=11217 Score = 178 bits (196), Expect = 1e-39 Identities = 311/450 (69%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 ||| |||| | |||||| || || | ||| || || || || |||||||| ||||| Sbjct 2155 CTTGTCACAGCCCAACTCCAGCAGCAAACGATCGGCCACGAACTCAATGTACTGCGACAT 2214 Query 92956 CAAATCACAATTCATTCCTAGAA-GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCT 93014 || ||| |||||||| || || | | || || || || || | ||||| || |||| || Sbjct 2215 CAGATCGCAATTCATACCGAGCATGTCG-ACCGGCAGGGCTTTCGTCAAAAATTCTTGCT 2273 Query 93015 CGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGA 93074 |||| ||||| || || | ||| || | || | || | ||||| ||||| | Sbjct 2274 CGATCACAACCGCATCACGAATGATGTCCGTCACGCGCTCCTTCGAGGGTTTCTGTACCA 2333 Query 93075 CATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT 93134 || ||| |||| | ||| ||||||||| || | |||||||| || || |||| || Sbjct 2334 GGTACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCT 2393 Query 93135 CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAA 93194 | || ||| || | || || | ||| || || ||||||||||| || || | |||| Sbjct 2394 CGTTCGAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAA 2453 Query 93195 AACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAAT 93254 | ||||| || || || ||||| ||||| ||||| ||||| | ||||||| |||| | Sbjct 2454 AGCTACCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGT 2513 Query 93255 TTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 | || || || |||||| || | ||||| || || || ||||| | || || | Sbjct 2514 TGGCCTTCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCA 2573 Query 93315 GTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||| || || || || ||| | |||| Sbjct 2574 ACGTTTCAATGGCATTGAACAGGAACTCTC 2603 Score = 111 bits (122), Expect = 2e-19 Identities = 191/274 (70%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 || || || ||||| || ||||||| ||| || ||||| || || ||||| ||||| Sbjct 2699 GAGTCACGAATGTACGTGTCGATTAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATC 2758 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 || ||||| || ||||| || || | |||||||| | ||| || || ||| || | Sbjct 2759 GCTATTTGAAAGCCGTAAAAGCAGCGTGCTTCCGTTACCTGTACCTCCTGACTGAAGCGT 2818 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532 || || || || || || || |||||||||||||| ||||| || || | | ||| Sbjct 2819 TCCACCAGGTTCTCGTTAACGATACCATCGGATGCGGCAAAGAAGGCAAGCACGTGCGAG 2878 Query 93533 ATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGAT 93590 || ||||| ||| | || ||| ||| ||||| || | || || || |||| Sbjct 2879 ATGAAATGACGTTCGC-TC-GGTTTCAGCGATTCCCAGTCTTTCATGTCCTTCGATAGAT 2936 Query 93591 CGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 |||| ||||| || ||||| || || ||||| || Sbjct 2937 CGACCTCTTCCACGGTCCAGAAGGAAGCTTCCGC 2970 >seq5463 Length=9219 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 6139 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 6198 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 6199 GTGGGTTCGAACCCCACTTCTGACA 6223 >seq10957 Length=3642 Score = 109 bits (120), Expect = 6e-19 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 467 AGTCAGAATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 408 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||| |||||||| Sbjct 407 GTGGGTTCGAACCCCACTTCTGACAAA 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556748300196880