Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 268 8e-67 seq3723 123 2e-23 seq13465 111 1e-19 seq1402 109 5e-19 >seq2 Length=295332 Score = 268 bits (296), Expect = 8e-67 Identities = 1051/1632 (64%), Gaps = 38/1632 (2%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 |||||||| ||||||| || || | | |||||||||||||||||||| |||||||| Sbjct 212083 TTGTCCACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGCAAATAATACATGCCC 212024 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || ||||| || | ||||| || | || |||| || | | | ||| | || Sbjct 212023 GTCTTCAATCCCATCTTCCAGCCGTAGAAATGGATCGACGTGAGCTTGCCATAGTTCGGC 211964 Query 128899 T-GACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 | | || | || || || ||||| ||||||||| || | || ||||||||||| Sbjct 211963 TCGGCT-ACGTGTATGTTGAACGATTGTGATTGATCAATGAATGCACCTCGATCGGCAGC 211905 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| ||| | |||| || ||||||||||| |||||||| || || | | | Sbjct 211904 CATTTTAATGCATGTTTTTACCGAGATTTCCCACACTGTTTTGTACAGGTCACGGATCTC 211845 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 |||||| ||| ||| ||| | || | | || || || | | || ||||| ||| Sbjct 211844 TTTTGGAATTGTTTCTATGCTTTGGATGGATCCATTATTGGACAAGATGTTGTTCTTCAT 211785 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTG 129137 | | ||| || ||| ||| | | | | ||| | || || Sbjct 211784 ATCGAGATCCCACAGCCCCATCGCAGTCAGATCTTGCAGGAGATGATGGTTCACCACCTG 211725 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 || || |||| ||| || || ||| |||| ||| ||| ||||||| || || || Sbjct 211724 GAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTACGGCTCGAAAGACTC 211665 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC---GA 129254 ||||||||| |||||||| ||||||| ||||| ||||| ||||| |||| || Sbjct 211664 ATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCCA---AAAGTAATGA 211608 Query 129255 GTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT-- 129312 || || | ||||||| | || | || |||||| | | ||||| ||| | ||| Sbjct 211607 ATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTTCCATA--GATCC 211550 Query 129313 GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAG 129372 || ||| | ||||||| ||||| || |||| || || | ||||| Sbjct 211549 GTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGACTTCCTTCA 211490 Query 129373 TAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAA 129432 || | |||| | |||| || || || |||||||||||||||| || ||| | Sbjct 211489 TACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCCAGCGCACCATAG 211430 Query 129433 TAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCA 129490 ||||| ||||| ||| |||| || |||| | || ||||| |||||||||||||| | Sbjct 211429 TAAATGGTTTCA--AATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTACGG-A 211373 Query 129491 TA-CGCA---ACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGA 129546 || |||| | ||| |||| ||||||| |||||| | ||| | || ||||| | Sbjct 211372 TAGCGCATTAAAATG---AATGCATCGGCCATACCTTGCACACCGATTCCAATGGGCCTG 211316 Query 129547 TGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTG 129606 || | || || | ||| | | |||||||||||||| || || |||||| Sbjct 211315 TGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTGATATCGATTATTTTG 211256 Query 129607 TTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCT 129666 || | ||| |||||| || | || | || | | || |||||| ||| | || Sbjct 211255 TTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAAAATCGTAA--GTCT 211198 Query 129667 ACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCG 129726 || | | || || || | ||||| |||| ||| || || ||| ||||| Sbjct 211197 TG-TCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTGCAATTTCG 211139 Query 129727 TTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAA 129786 | ||| |||||| ||||| || | |||||| ||| || |||||||| | | Sbjct 211138 TCTTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGTGCCAACA 211079 Query 129787 TGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTT 129846 | || |||||| ||||| ||||| ||||| ||||||| ||| ||||| ||||||| Sbjct 211078 TTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTT 211019 Query 129847 TCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAAT 129906 || || |||| ||| | || | |||| || | ||| | | |||| | ||| Sbjct 211018 TCCACCTGCGATTCAATGATTGCATACCACAAATCCTGTGCCCTTACTTGTCGAATGAAT 210959 Query 129907 TTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCG 129966 || |||||||| | |||||| || || ||| || || || Sbjct 210958 CGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCTTCACCCCAA---GTTTCC 210902 Query 129967 AGCAAC---GGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGT 130023 |||| || | || | || ||||||| |||||||||| | | || || || ||| Sbjct 210901 GCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCCTCTACCCGT 210842 Query 130024 TTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCG 130083 |||||||||| ||| |||| ||||| ||||| |||| || || || ||||| Sbjct 210841 TTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACGCACCTCCTCC 210782 Query 130084 GCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACA 130143 || |||| ||||| || || || ||| | | || | ||||| ||||| | Sbjct 210781 TTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCATGGTTCGAGG 210722 Query 130144 TAAATTGCCATTGCGCCCTTCCGT---TTGCCCCCTTGGTCAACGTGGCGCACGGCATTG 130200 || || || | || ||| ||| ||||| || || || || | || | | ||| Sbjct 210721 TATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCGGGCTGTGTTG 210662 Query 130201 TTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCA-ATGAA 130259 ||||| ||||||| ||| | |||| ||||| | | ||||| |||| || | ||| | Sbjct 210661 TTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGC-CTGAGATGTA 210603 Query 130260 ACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATAT 130319 | || || |||| ||||| | || || || ||||| | ||||||| || Sbjct 210602 CGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAATTCCGCCTGCTGATTTTGAAAT 210543 Query 130320 CAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAG 130379 || ||| || | |||||| ||||| || || | ||||| || || ||| |||| Sbjct 210542 CAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCGTCAGACATGGTTAG 210483 Query 130380 GAGGAAACACGA 130391 || ||||| || Sbjct 210482 CAGAAAACAAGA 210471 >seq3723 Length=15797 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | ||||| || || |||| ||||| || || | | Sbjct 4241 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCATCG 4182 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| || || ||||||||||| || || || ||||| Sbjct 4181 GACACGATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 4122 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| |||||| | || || |||||| Sbjct 4121 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTATCGGACTACAAC 4062 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | ||| | || ||||| | || || ||| Sbjct 4061 ATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCGACTCCGTGGTGGT 4014 >seq13465 Length=2195 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||||||||| ||||||||| | || ||||| || | | | Sbjct 821 ATGCAGATCTTTGTTAAAACTTTAACGGGTAAAACGATGACCCTTGATGTTGTCGCTTCG 762 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG-GAGGGTATTCCACCCGATCA 22337 || || || || || ||| | ||||| || | | | || |||||| |||| || || Sbjct 761 GAAACGGTTTTGGACATTAAAAACAAAAT-CATGGAACGCGAAGGTATTGCACCAGACCA 703 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| |||| ||||||||||||||||||||||| || | | || |||||||| Sbjct 702 GCAGCGTATTATTTTTGCCGGCAAACAGTTAGAGGAGGGTCGTATTATATCTGATTACAA 643 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 || ||| | | ||| || || ||| Sbjct 642 TATCCAACACGGATCGACGATGCAT 618 >seq1402 Length=30251 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 9038 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 9097 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || |||||||| || || || ||| Sbjct 9098 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGAT 9157 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || |||||||| || ||| | ||||| ||||| | ||||| ||| Sbjct 9158 CAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTAC 9217 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || |||||| | || | || | || ||||||| || Sbjct 9218 AACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGG 9267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419645324339530