Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9121 150 3e-31 seq1402 149 1e-30 seq3723 138 2e-27 >seq9121 Length=5000 Score = 150 bits (166), Expect = 3e-31 Identities = 344/516 (67%), Gaps = 4/516 (1%) Strand=Plus/Plus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 || || ||||| ||||| || || |||| ||| | ||| |||||| |||||| Sbjct 3793 CCCGTGGCAATTACAAAATCTTCCGGCTTGTCCTGCTGCATCATGAGCCACATCGCTTCG 3852 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || || || || |||||||| || || || | |||| || || || |||| || Sbjct 3853 ACGTAATCTTTGGCGTGGCCCCAGTCACGTTTCGAATCCAGATTGCCCAGCTCCAGGTAT 3912 Query 268331 TTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTC 268390 | |||| |||||| | || | ||| || ||||| || || || || | Sbjct 3913 TCTTGCTGTCCGAGCGATATCTTCGCCACCGAGCGGGTTATTTTGCGTGTGACAAAATTT 3972 Query 268391 TCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATAT 268450 || || || | || |||||| || || || || || ||||| |||||||| | || Sbjct 3973 TCCCCCCGGCGCGGCGACTCGTGATTAAACAGAATCCCATTGCAAGCGAACATATCGTAC 4032 Query 268451 GCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAA 268510 || || || ||||| | || |||||||| | ||||||| ||| |||||||| || Sbjct 4033 GCTTCGCGATAGTTTATCACAATCCAGTATCCGTACATCTTCGCACAGGCGTACGGCGAC 4092 Query 268511 CGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGG--ACTTTGCCAAAGAGCT 268568 ||||||| ||| || ||| | || || || | |||||| || || || | |||| Sbjct 4093 CGTGGATAGAATGGAGTCTTCTCGTTCTGCGG--TGTCTCGGCCACCTTTCCGTACAGCT 4150 Query 268569 CGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCT 268628 |||| || |||||||||||||| ||||| || | ||| | || || || | Sbjct 4151 CGGACGTGGATGCTTGGTAGAAGCGGACAGTTTTCTCCTGTCCGACTGTACGAATGGCGT 4210 Query 268629 CGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATG 268688 | |||||||| || || || | | |||| || || || || || || || ||||| | Sbjct 4211 CCAGCAAACGTAGCGTACCGACGGCATCTACCTCGGCCGTGTATTCGCTCAAATCGAACG 4270 Query 268689 ACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAA 268724 | | || ||| || || || ||| |||| || |||| Sbjct 4271 ATATCTTGACGTGACTTTGTGCGGCCAGATTGTAAA 4306 >seq1402 Length=30251 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 9267 CCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 9208 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | |||||| ||||| || || || | || || || || || Sbjct 9207 AGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 9148 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| ||||| || |||||| || || | | || || Sbjct 9147 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 9088 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 9087 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 >seq3723 Length=15797 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || |||| |||| || || || || || || || ||||| || Sbjct 4009 TACTTACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAG 4068 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || ||||| | ||||| || | |||||| |||||||| ||||| | || || || Sbjct 4069 TCCGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCT 4128 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || || || |||||||| || ||||||||||| || ||||| ||||| | || Sbjct 4129 GGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGC 4188 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || || | |||||||| || || ||||| || || ||||| |||||||| || || Sbjct 4189 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGATTCT 4247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921436209234640