Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq48 129 1e-24 seq1402 125 2e-23 seq9121 120 7e-22 >seq48 Length=116589 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 12/205 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || ||||||||||| | || || || |||||| Sbjct 116520 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAG 116461 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| || || || || || |||||||| || || |||||| Sbjct 116460 ATCAAACGCTGCTG---ATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACG 116404 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || |||||||| ||||| || ||||| ||| Sbjct 116403 TTCTCGATCGTGTC---CGATGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 116347 Query 288457 TTGACGAATATCTGCATTATGTTAT 288481 || ||||| ||||||||| ||| || Sbjct 116346 TTCACGAAGATCTGCATTCTGTAAT 116322 >seq1402 Length=30251 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || |||| ||| || || || || || ||||||| Sbjct 9267 CCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 9208 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || |||||||||||||| ||| ||| Sbjct 9207 AGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 9148 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| ||||| ||||| || || || | ||| | || || Sbjct 9147 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 9088 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || || || |||||||| |||||||| Sbjct 9087 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 >seq9121 Length=5000 Score = 120 bits (132), Expect = 7e-22 Identities = 356/537 (66%), Gaps = 14/537 (3%) Strand=Plus/Minus Query 72270 CGTCCGGACGAAATCTACAATTTGGCCGCACAATCGTTTGTTCATGATA--GTTTTAATC 72327 |||||| |||||| |||||| ||||||||||| || ||| |||| ||| | | Sbjct 4319 CGTCCGTCCGAAATTTACAATCTGGCCGCACAA-AGTCACGTCAAGATATCGTTCGATTT 4261 Query 72328 AAGCCGAGGTGACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTC 72387 || ||| || || | |||||||| ||||| | ||||| || |||||| ||| Sbjct 4260 GAG-CGAATACACGGCCGAGGTAGATGCCGTCGGTACGCTACGTTTGCTGGACGCCATTC 4202 Query 72388 GTATA-TCG----GGTGTCAACTCT-CGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATG 72441 ||| | ||| || | |||| | || | | |||||| || |||| ||| |||| | Sbjct 4201 GTACAGTCGGACAGGAGAAAACTGTCCGCTTCTACCAAGCATCCACGTCCGAGCTGTACG 4142 Query 72442 GAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACG 72501 |||| ||| || | || |||| || || ||||| || ||||| || || |||| Sbjct 4141 GAAAGGTGGCCGAGACACCGCAGAACGAGAAGACTCCATTCTATCCACGGTCGCCGTACG 4082 Query 72502 GTGTTGCAAAGTTGTACGCTTATTGGATCTGT-AAAAATTACCGTGAGTCGTATAACATG 72560 ||| ||| |||||| || ||||| ||| | ||| || || || |||| | ||| Sbjct 4081 CCTGTGCGAAGATGTACGGATACTGGAT-TGTGATAAACTATCGCGAAGCGTACGATATG 4023 Query 72561 TATGTATGCAACTCGATT-TGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGT 72619 | | ||||| |||| ||||| ||||||||| || | | || | | || || Sbjct 4022 TTCGCTTGCAATGGGATTCTGTTT-AATCACGAGTCGCCGCGCCGGGGGGAAAATTTTGT 3964 Query 72620 GACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTA 72679 || || ||||| || ||| ||||| || | || || ||| | || | Sbjct 3963 CACACGCAAAATAACCCGCTCGGTGGCGAAGATATCGCTCGGACAGCAAGAATACCTGGA 3904 Query 72680 TCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAAT 72739 || || ||| | ||| | ||| | || ||||| | || || |||||||| ||||| || Sbjct 3903 GCTGGGCAATCTGGATTCGAAACGTGACTGGGGCCACGCCAAAGATTACGTCGAAGCGAT 3844 Query 72740 GTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAAC 72796 |||| | ||| |||| || || | ||||| || | ||| ||||| || || |||| Sbjct 3843 GTGGCTCATGATGCAGCAGGACAAGCCGGAAGATTTTGTAATTGCCACGGGCGAAAC 3787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179410122327836