Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq48 122 9e-23 seq1488 96.9 4e-15 seq6437 93.3 5e-14 seq27 93.3 5e-14 seq7 93.3 5e-14 seq1770 89.7 6e-13 seq4604 87.8 2e-12 seq1573 87.8 2e-12 seq6906 86.0 7e-12 seq454 86.0 7e-12 seq1402 82.4 8e-11 >seq48 Length=116589 Score = 122 bits (134), Expect = 9e-23 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | ||||| ||||| || |||||| || || ||||| || | Sbjct 116557 ACCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 116498 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || |||| || ||||||||||| ||||| || | |||||||| || | || Sbjct 116497 CAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGG 116438 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TC 42157 | || |||||||||| ||| || || | || | | |||||| |||| || Sbjct 116437 AATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTC---CGATGGCTC 116381 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | ||||||||| ||||| || |||||||| || ||||| |||||| Sbjct 116380 GACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATT 116329 >seq1488 Length=35567 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 8135 AAAAACTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8194 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 8195 TGACCACTATACTATCGAGGA 8215 >seq6437 Length=7821 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 56997 GAAAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||| |||||| || | | |||||||||| ||||||||||||||||||||| Sbjct 3266 GAAAAATTAATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 3207 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 3206 ATACTGACCACTATACTATCGAGGA 3182 >seq27 Length=129936 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || |||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 98781 AAAGATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 98722 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 98721 TGACCACTATACTATCGAGGA 98701 >seq7 Length=189452 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | |||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 135858 AAAACTCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 135917 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 135918 TGACCACTATACTATCGAGGA 135938 >seq1770 Length=25997 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 8785 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 8726 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 8725 TATACTATCGAGGA 8712 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 12597 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 12538 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 12537 ATACTATCGAGGA 12525 >seq4604 Length=10880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||| |||| |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 8797 AAAAGTTTTTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 8856 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 8857 TACTGACCACTATACTATCGAGGA 8880 >seq1573 Length=24284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 15908 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 15967 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 15968 TACTATCGAGGAT 15980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 15443 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 15502 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 15503 TACTATCGAGGA 15514 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 16192 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 16133 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 16132 TACTATCGAGGA 16121 >seq6906 Length=7186 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4716 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 4657 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4656 TACTATCGAGGA 4645 >seq454 Length=50808 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 35429 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 35370 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 35369 TACTATCGAGGA 35358 >seq1402 Length=30251 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| ||||| ||||| || | ||| || || |||| || Sbjct 9250 CACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTC 9191 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||||| || || || || |||||||| || | || | || |||||| ||| Sbjct 9190 CAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 9131 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || || | || | | ||| || | || || || | || ||||| || Sbjct 9130 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 9071 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| || || || || ||||| ||||| || Sbjct 9070 ACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 9038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543103057434080