Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 223 3e-53 seq3723 114 1e-20 seq1402 109 5e-19 >seq2 Length=295332 Score = 223 bits (246), Expect = 3e-53 Identities = 917/1434 (64%), Gaps = 38/1434 (3%) Strand=Plus/Minus Query 154014 TGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTG 154073 || ||||| | || || || ||||| | ||| || || || ||| | || ||| Sbjct 211741 TGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTG 211682 Query 154074 AACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATAC 154133 |||||||||| || || |||||||| |||||||| || || | || || ||||| Sbjct 211681 TACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGA 211622 Query 154134 GCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAA 154193 |||| | || || || || | ||||| ||||| || |||||| || ||||| Sbjct 211621 GCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAG 211562 Query 154194 TTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCC 154253 ||||| | | || |||| | ||||||||| ||||| || || || || || || Sbjct 211561 TTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACC 211502 Query 154254 GGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCT 154313 ||||| | ||| | |||||| |||| | ||| || || |||||||| ||||| Sbjct 211501 GGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCC 211442 Query 154314 AACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTT 154373 | ||| ||||||| | |||||| ||||||| || | | ||| ||| | || ||| Sbjct 211441 AGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTT 211382 Query 154374 TCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACG 154433 |||||||| | | || || | || |||||||| | ||||| | || | ||||| | Sbjct 211381 TCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATG 211322 Query 154434 GGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATA 154493 || ||||| | || || || || || | ||||| || ||||||||||| Sbjct 211321 GGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTGATATCGATT 211262 Query 154494 ATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGC--GACAAAATC-A 154550 ||||| || | | || |||||||| Sbjct 211261 ATTTTGTTCA--GATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAAAATCGT 211204 Query 154551 AACAC---TCCGCTTTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCA 154607 || | || | |||| || | | |||| | || |||| || || || ||| Sbjct 211203 AAGTCTTGTCTGTCTTTACGAACATG-TTTAGGGCGATCGAAGCCAGATTACACACTGCA 211145 Query 154608 ATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTG 154667 ||||| || ||| | ||||| |||| |||||| ||| ||| |||||| Sbjct 211144 ATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGTG 211085 Query 154668 CCCAGGTTTTTCTGATTCGATTTGATG-TTGCATGCGTCTTTGTACAAAATGTACGGGGT 154726 || | || | ||||| | ||| | | |||||||| || ||||||| || ||||| Sbjct 211084 CCAACATTCTGTTGATT-GCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTAC 211026 Query 154727 GCCCGTTTCCACTTGGGTTTCAATAATTG--TGCGAAACAGACTTCGCGCCTCAACTTGA 154784 |||||||||||| || | |||||| |||| | | | | | || | ||| ||||| Sbjct 211025 GCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCT--GTGCCCTTACTTGT 210968 Query 154785 CAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTAC 154844 | | | ||||| || |||| || | ||||||| | || |||||| || | Sbjct 210967 CGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCTTCACCCCAA 210908 Query 154845 ACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGT 154904 |||| ||| || ||||| || || ||||||| |||||||||||| | | Sbjct 210907 GTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCCTCT 210848 Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 || ||||||||||||| |||||| | |||||||||||| |||| ||||| || Sbjct 210847 ACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACGCACC 210788 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGC 155024 || || ||| ||||| ||| | || || ||| || ||| || | ||||| || Sbjct 210787 TCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCATGGT 210728 Query 155025 TCTAAATATACGGCCATCGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGACGCACA 155081 || | |||| ||| | || || ||| || || || |||||||| | || | Sbjct 210727 TCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCGGGCT 210668 Query 155082 CAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC---- 155137 || |||||||| |||| || ||| ||| ||| | | | ||||| ||||| Sbjct 210667 GTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGCCTGAG 210608 Query 155138 ACGTATCG--CGCTGC-CGCGAGCACGCGCTTTATGAACATTAACGCCCAA-ACCTCCGC 155193 | ||| || | || | ||||| || |||||||| | |||||| || || Sbjct 210607 ATGTA-CGTTCCCTTCGCGCGAATAC------AGTGAACATTCA-GCCCAATTCCGCCTG 210556 Query 155194 CGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTT 155253 | |||| || || ||||||| | | | || || || || |||| || || || | Sbjct 210555 CTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCGT 210496 Query 155254 CTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTG-AGGGCAGCCGGCCGCAAAT 155312 | || || | || ||||| || || | || || | | | || | |||||||| Sbjct 210495 CAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAG-CTGCCGCAAAC 210437 Query 155313 AATGTAGGACTAGCGTGTGTAAACATTTTG-TTGGCGGTTAAGTTGTAAGTTTCGATGGC 155371 | || || || || ||||| || | | | |||||||| || |||||||| Sbjct 210436 ATGGTCGGTGAGGCATGGGTAAA-ATAACGCTCCGAAAGCAAGTTGTATGTCTCGATGGC 210378 Query 155372 GGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 || || ||||| ||| |||||||||||||| |||||||||| |||||| || Sbjct 210377 TGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGTGCTG 210324 >seq3723 Length=15797 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| ||||| | || ||||| || ||||||||||| || | Sbjct 4014 ACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 4073 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | ||||| |||||||| || || || Sbjct 4074 TAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGG 4133 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || ||| ||| ||| || | || || | || || Sbjct 4134 GATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGAC 4193 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| |||||||| ||||| Sbjct 4194 CTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 >seq1402 Length=30251 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| || |||| || || || || ||||||||||| || | Sbjct 9267 CCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 9208 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||| |||||| | || || |||||||| || || || Sbjct 9207 AGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 9148 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | ||||| || || || Sbjct 9147 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 9088 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| ||||| || ||||| || Sbjct 9087 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 9038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499543859259280