Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq607 100 2e-16 seq1846 82.4 6e-11 >seq607 Length=40375 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 || |||||||| ||||||| ||||| || ||| ||||| |||| | | ||||||||| Sbjct 19071 GCTGGGTTCGGGGTGACGGGTGGCGTACACCGGCTGTGGTGCCACCGATCGTACAAGGCC 19130 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| | | | ||||| | |||| || | || || |||||||| ||| Sbjct 19131 AAACTGCCGCTGCGCATCATCCTGATGTGCTGCTATTCAATCGCCGGCCAGAACACGATC 19190 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||| | ||||| | | || ||||||||||| || || ||||| || || Sbjct 19191 TACGACTGGGTCCGGGATCATCGCATCCATCACAAGTACTCGGAAACGGACGG-GGATCC 19249 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 ||||||||| ||| |||| ||| || | ||||||| || ||||| ||| Sbjct 19250 ACACAACGCGAACCGGGGCTTCCTGTACGCGCACGTTGGCTGGCTGATG 19298 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 ||||| | ||||| |||||||||||||| ||||| |||||||| | ||||||||||| | Sbjct 22073 TGGCTATGGGCGAAGGATGGCACAACTATCACCATGTGTTCCCGTGGGACTACAAGGCAG 22132 Query 108941 CCGAGTTGGGGAACGACT---TTAATTTCACC 108969 | ||| |||| ||| ||| ||||| | ||| Sbjct 22133 CGGAGCTGGGCAACTACTCGGTTAATGTGACC 22164 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 || || ||||| || |||||||| | ||||||| | ||||| |||| ||| ||||| || Sbjct 25148 GCGGGATTCGGCGTAACGGCCGGTGCCCATCGGCTCTGGACGCACAGAGCGTACAAAGCG 25207 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||||| | | ||||| | |||| || || | || ||||||| | Sbjct 25208 AAGCTGCCGTTGCGCATCATCCTGATGTGCTGCTACTGTCTGTCCGGCCAGAACAGTCTG 25267 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCA 108519 | ||||||| ||| || | | || ||||||||||| || || ||||| || Sbjct 25268 TTCGATTGGGTGCGCGACCATCGCATCCATCACAAGTACTCGGAAACCGATGCCGATCCG 25327 Query 108520 CACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGAT 108569 |||||| | ||| |||| || | | | ||||||| || ||||| |||| Sbjct 25328 CACAACTCGAACCGGGGCTTTTTCTACGCGCACGTCGGCTGGCTGCTGAT 25377 >seq1846 Length=22134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 118599 ATATCCCTGCGCACGCGCGGGGTCGCCGTCGCGGTGCAAGCCAGT-ATCGGCACGCTCGG 118657 || ||| | || ||||| || | ||||| || || || | || | ||||| || | || Sbjct 7371 ATGTCCATCCGTACGCGTGGATTTGCCGTGGCCGT-CAGGGCAATGATCGGAACCTTGGG 7313 Query 118658 GAAAATAGTTC--GAAGGACGGAGAGTTTTAGGTAGTCGGATCTAAAATCGTGCCCCCAC 118715 ||| | |||| | ||||||||||||||| |||||| | || ||| ||||| ||||| Sbjct 7312 GAA--TTGTTCCCGCAGGACGGAGAGTTTTTTGTAGTCTGGTCGAAAGTCGTGACCCCAG 7255 Query 118716 TCACAGACACAGTGTGCCTCGTCTATCACTATTCG 118750 || | |||||||| ||||| || ||||| || || Sbjct 7254 GCAGACACACAGTGCGCCTCATCGATCACAATCCG 7220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381697600541328