Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 356 2e-93 seq5733 136 4e-27 seq48 98.7 1e-15 seq1402 89.7 5e-13 seq3723 82.4 8e-11 >seq2 Length=295332 Score = 356 bits (394), Expect = 2e-93 Identities = 1014/1542 (66%), Gaps = 40/1542 (3%) Strand=Plus/Minus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| ||||| || |||||||||| |||||| |||| ||| || || ||| | Sbjct 211738 TGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTAC 211679 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || || || || || || ||||| | |||||| ||||| | ||||||||||| ||| Sbjct 211678 GGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCC 211619 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | | || ||||| || | |||||| | || | || || ||| | ||| | | Sbjct 211618 AAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTTC 211559 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || ||| |||| | ||||||||| ||||||||||| || ||| || | ||| Sbjct 211558 CATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGA 211499 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || || || |||| ||| ||||| |||| ||| | ||||| || || || ||| Sbjct 211498 CTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCCAGC 211439 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 || |||||||| |||||||| ||||||| ||| || || |||||||| ||| Sbjct 211438 GCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCG 211379 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 ||||| ||||| | | || || ||||||| ||| || | ||||| || ||||| Sbjct 211378 TACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATGGGC 211319 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATT 153506 | || | ||| |||| |||| || || ||||||| ||| |||||| ||| Sbjct 211318 CTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAGTTGATATCGATTATT 211259 Query 153507 TTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTC 153566 ||||| || |||||| ||| | |||| | ||||||| || | ||||| || ||| Sbjct 211258 TTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAAAATCGTAAGTC 211199 Query 153567 ATTTC-GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGT 153625 | || ||| |||| | || | ||| || || ||||||||||| || || | Sbjct 211198 TTGTCTGTC----TTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTGCAAT 211143 Query 153626 CTCTTCGGCGTCGCT--GTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683 || || ||| | ||||| || ||||| | ||| | ||| ||| |||||| | Sbjct 211142 TTCGTC--TTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGTG 211085 Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 || | ||| || ||||||||||| |||||||| || || ||| | ||||| |||||| || Sbjct 211084 CCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTACG 211025 Query 153744 CCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 153800 || || || || |||| ||| | ||| | ||| || ||||| || | || Sbjct 211024 CCCGTTTCCACCTGCGATTCAATGATTGCATACC---ACAAATCCTGTGCCCTTAC---T 210971 Query 153801 TGCCGA---TAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCG 153857 || ||| | || ||||| ||||||| ||| ||||||| ||| ||||| || || Sbjct 210970 TGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCTTCACCC 210911 Query 153858 TAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCG 153917 | || || | || ||||| | || || |||||||| |||||| |||| || Sbjct 210910 CAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCC 210851 Query 153918 TTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTG 153977 | || ||| ||| ||||||||||| | ||| | ||||| | | ||| || | | | Sbjct 210850 TCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTG-CACG 210792 Query 153978 CA-ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAG-CACGCTATAGATGTCGGCGTGCC 154035 || |||||| ||| |||| ||||||| || || | | | | || | |||| Sbjct 210791 CACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGA-ATACATCACCATGCC 210733 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACG---CTTTCCGCCCTGATCGACGTGGC 154092 | ||||| | ||| | ||| | || || || || || |||||||| || | | Sbjct 210732 ATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATC 210673 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCG 154152 | | | |||||| | || |||| ||| ||| ||| ||| | | | ||||| || Sbjct 210672 GGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGC 210613 Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212 ||| | | || ||||| | || || || | ||||| ||||| | Sbjct 210612 CTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAATTCCGCCTGCTG 210553 Query 154213 ACTTTGATATGGCAGCGCAGTC-GC-CCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270 | ||||| || ||||||| | || ||||| ||||| || || || |||||||| Sbjct 210552 ATTTTGAAAT--CAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCGTC 210495 Query 154271 GCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAG 154330 | | |||| ||||| || ||| || ||| |||| | |||| ||| | Sbjct 210494 AGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGCTGCCGCAAACAT 210435 Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTC----ATCATGCGGTACGTTTCGATGG 154386 ||| || || || ||||| | |||| | || | ||| || ||||||| Sbjct 210434 GGTCGGTGAGGCATGGGTAAA----ATAACGCTCCGAAAGCAAGTTGTATGTCTCGATGG 210379 Query 154387 CGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGAC 154446 | | ||||| || || || || || |||| ||| |||||||| | |||||||||||||| Sbjct 210378 CTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGTGCTGCGGAC 210319 Query 154447 GTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGA 154506 |||| | | || | |||||||| | ||| ||| | |||||| | || | Sbjct 210318 GTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGTTTTGAACCCAA 210259 Query 154507 AATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCAT 154548 | || |||||| ||||||| | || | | |||||||| || Sbjct 210258 AGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAAT 210217 >seq5733 Length=11217 Score = 136 bits (150), Expect = 4e-27 Identities = 280/409 (68%), Gaps = 7/409 (2%) Strand=Plus/Minus Query 52327 TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCA 52386 |||||||||| || ||||| | |||||| |||| |||||| |||| | | |||| Sbjct 2573 TGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACTGGATCTCGAGCAAGAAGGCCA 2514 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 | | ||| || | ||||| || || ||||| ||| | || || ||| |||| Sbjct 2513 ACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCT 2454 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 |||||||||| || | | || | | ||| | ||||| || ||||||||| |||| Sbjct 2453 TTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGATGCCGGGACTGACGTTCTCGAACG 2394 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || |||| ||||||||||||||||||||| |||||||| ||||| | |||| | Sbjct 2393 AGCTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTGCCTGCCTGATGTTCAAGTACC 2334 Query 52567 GCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCT 52625 || || |||| | || ||| | || | || ||| | || ||||| | Sbjct 2333 TGGT-ACAGAAACCCTCGA--AGGAGCGCGTGACGGA-CATCATTCGTGATGCGGTTGTG 2278 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA-CGCGCA 52684 ||||| | || ||||| ||| || ||||||||||| |||| || ||||| ||| | Sbjct 2277 ATCGAGCAAGAATTTTTGACGAAAGCCCTGCCGGTCGACATGCTCGGTATGAATTGCG-A 2219 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||| ||||||| ||||| ||||| |||||| || || || || Sbjct 2218 TCTGATGTCGCAGTACATTGAGTTCGTGGCCGATCGTTTGCTGCTGGAG 2170 >seq48 Length=116589 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| | Sbjct 116556 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 116497 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || || || ||||||| |||| | |||||| || || ||||| Sbjct 116496 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 116437 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 116436 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 116377 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || |||||||| || || || || |||||||| Sbjct 116376 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 >seq1402 Length=30251 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || || |||||| || || ||||||| | Sbjct 9234 GACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCA 9175 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || ||||| || || || || || || ||| || || | Sbjct 9174 AAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACA 9115 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||| ||||| | || | || ||||| || || ||||| Sbjct 9114 TTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTG 9055 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 9054 ACGAAGATCTGCAT 9041 >seq3723 Length=15797 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || ||||| |||||||||||||| ||||| ||| Sbjct 4027 CGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCG--ATAGTGTGCGGC 4084 Query 138460 --TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTT 138517 ||||| || || || |||| |||| |||||||| || || || || || || || | Sbjct 4085 CATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCT 4144 Query 138518 TGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 |||| ||| ||| || | | ||| | ||||| | | ||| ||||| | || | Sbjct 4145 TGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGA 4204 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || || || ||||| || |||||||||||| Sbjct 4205 TGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATG 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496162142588640