Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 246 3e-60 >seq2 Length=295332 Score = 246 bits (272), Expect = 3e-60 Identities = 1185/1871 (63%), Gaps = 40/1871 (2%) Strand=Plus/Plus Query 122831 CGATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGA--TATTTGaaaaaa 122888 ||||| | |||||| || ||||| | |||||| || ||| ||| |||||| || Sbjct 210239 CGATTTTGGATACAACTACTTTGGGTTCAAAACATTGGAA--CGGTCCTATTTGTTGAAG 210296 Query 122889 aTCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTG 122948 ||| ||| ||| | | |||||| || || ||| | |||||||| || || || | Sbjct 210297 ATCAAGGGTAAGATTGTTGAACGTCCGCAGCACATGTTGATGCGCGTTGCGATCGGTATA 210356 Query 122949 CACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTC 123008 || || |||||||| || | ||| || ||| | ||| | || | | ||| Sbjct 210357 CATGGTGAAGACATCGATGCAGCCATCGAGACATACAACTTGCTTTCGGAGCGTTATTTT 210416 Query 123009 ACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGT 123068 || || || || || |||| || || | ||| | || ||| |||| || ||| Sbjct 210417 ACCCATGCCTCACCGACCATGTTTGCGGCAGCTACGCAACGTCCACAGCTGTCATCTTGT 210476 Query 123069 TTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGC 123128 ||| |||| ||| || || || || || ||||||||||| || | | || Sbjct 210477 TTTCTGCTAACCATGTCTGACGATAGTATTGAAGGTATCTATGATACGCTAAAGCAGTGT 210536 Query 123129 GCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGC 123188 ||| ||||||| |||| | ||||| || || |||| || ||| ||| | || Sbjct 210537 GCGCTGATTTCAAAATCAGCAGGCGGAATTGGGCTGAATGTTCACT--GTATTCGCGCGA 210594 Query 123189 --GGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAG 123246 |||| |||| | |||| |||| || | |||| | | | | |||||||||| Sbjct 210595 AGGGAACGTACATCTCAGGCACGAACGGGATTTCGAACGGGTTGGTACCGATGCTGCGAG 210654 Query 123247 TTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA---ACGCAAAGGCGCGATGG 123303 | ||||| ||| | | || | || || ||||| ||||| ||| || || | | Sbjct 210655 TGTACAACAACACAGCCCGATATGTGGATCAGGGTGGCAACAAACGACCGGGAGCTTTTG 210714 Query 123304 CGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACA 123363 | || || || ||||| ||||| | |||||| | ||| ||| | || | || |||| Sbjct 210715 CCATATACCTCGAACCATGGCATGGTGATGTATTCGAGTTTCTGGATCTGAAGAAAAACA 210774 Query 123364 TGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGT 123423 || ||| || | || || || |||| |||||||| ||| |||| ||| ||| Sbjct 210775 CCGGCAAGGAGGAGGTGCGTGCACGTGACATGTTCTACGCTTTGTGGATACCGGATCTGT 210834 Query 123424 TTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCC---CGATCGGTGTC 123480 ||||| ||| ||| | | ||| ||||| || ||||| || |||| |||| Sbjct 210835 TTATGAAACGGGTAGAGGCTAACGAAATGTGGAGTCTGATGTGCCCTCACGAT---TGTC 210891 Query 123481 CCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCG 123540 | || ||| || || || | |||| || ||||| ||| |||||| | Sbjct 210892 CTGGGTTGGCGGAAACTTGGGGTGAAGAGTTCGAGACACTGTACACGCGTTACGAGAAGG 210951 Query 123541 AAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACAC 123600 | || | || | || || ||||| ||||||| | || || ||| | | Sbjct 210952 AGGGACGATTCATTCGACAAGTAAGGGCACAGGATTTGTGGTATGCAATCATTGAATCGC 211011 Query 123601 AAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATC 123660 | || ||||| || ||||| ||||| ||||| || || ||||| | |||| ||||| Sbjct 211012 AGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAATCGTAAAAGCAATC 211071 Query 123661 AGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC--AG 123718 | || | || || ||||| || ||| | ||| | || ||| | || ||| | Sbjct 211072 AACAGAATGTTGGCACCATAAAGTGCTCTAACTTGTGCACAGAGATTGTAGAGTACTCAT 211131 Query 123719 CGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGA 123778 ||| || || | || ||||||||| |||||||||| | | || | ||| | Sbjct 211132 CGAAA--GACGAAATTGCAGTGTGTAATCTGGCTTCGATCGCCCTAAACATGTTCGTAAA 211189 Query 123779 AAACGGCG---CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAA 123835 | | | ||| |||| || ||| || | | || | ||| || Sbjct 211190 GACAGACAAGACTTACGATTTTGTAAAGCTTAAGGAAGTCGCTAAGATTGTGACGCGCAA 211249 Query 123836 TTTGAACAAAATTATCGATGTTAATTTTTATCCTTT---GGAGG--AAGCGCGTTTGTCT 123890 | |||||||||| |||||| | || | ||||| | ||||| |||||| ||| Sbjct 211250 TCTGAACAAAATAATCGATATCAACTACTATCCAGTACCGGAGGCGAAGCGC-----TCT 211304 Query 123891 AATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATG 123950 || || ||||| || | ||| | || | ||||| ||||||| || || | | Sbjct 211305 AACATGCGCCACAGGCCCATTGGAATCGGTGTGCAAGGTATGGCCGATGCATTCATTTTA 211364 Query 123951 CTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACA 124010 ||||| |||||||||||||| || || | ||| ||| |||||| ||||| Sbjct 211365 ATGCGCTATCCGTACGAAAGCGAAGAGGCCCAAAAGCTGAATCAACAAATATTTGAAACC 211424 Query 124011 ATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAA 124070 ||||| || || || |||| ||||| ||||| | || || |||| ||||||| Sbjct 211425 ATTTACTATGGTGCGCTGGAAGCGAGTTGCGAGTTAGCCGAACGGGACGGTCCGTACGAG 211484 Query 124071 AGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACA 124130 | || | || || |||| ||| ||| | || |||||||| |||||||| | Sbjct 211485 ACGTATGAAGGAAGTCCGGTAAGCAAAGGCGTATTACAGTACGAAATGTGGAACAAGGAA 211544 Query 124131 CCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGT 124190 ||||| || | ||| ||||| || |||||| || ||| | | |||||| | ||| Sbjct 211545 CCGACGGATCTATGGAACTGGGCCGAGTTAAAAGAAAAGATAGCAAAGCACGGAATTCGT 211604 Query 124191 AACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAAC 124250 || || | | |||| |||||||| || | || || ||||| || || ||||| Sbjct 211605 AATTCATTACTTTTGGCTCCGATGCCGACCGCTTCAACGGCGCAAATATTGGGCAACAAT 211664 Query 124251 GAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTT 124310 || || |||||||||| ||| || | || ||||| ||||| | ||||| || Sbjct 211665 GAGTCTTTCGAGCCGTACACATCGAACGTTTATAATCGACGTGTGTTGTCGGGCGAGTTC 211724 Query 124311 CAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAAC 124370 || ||| | || |||||| | || | || || ||| | ||| ||| | Sbjct 211725 CAGGTGGTGAACCATCATCTCCTGCAAGATCTGACTGCGATGGGGCTGTGGGATCTCGAT 211784 Query 124371 ATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAA 124430 ||| ||| | || | | ||| | | || |||| | | ||||| || Sbjct 211785 ATGAAGAACAACATCTTGTCCAATAATGGATCCATCCAAAGCATAGAAACAATTCCAAAA 211844 Query 124431 CACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT---GAAAAATAAACGATTAATTGAA 124487 | || | ||||||||||| ||||||||||| | || |||| || ||| || Sbjct 211845 GAGATCCGTGACCTGTACAAAACAGTGTGGGAAATCTCGGTAA--AAAC-ATGCATTAAA 211901 Query 124488 ATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCG 124547 ||||| | ||| ||||| || | || |||||| ||||| || ||| | ||||| Sbjct 211902 ATGGCTGCCGATCGAGGTGCATTCATTGATCAATCACAATCGTTCAACATACACGTAGCC 211961 Query 124548 GAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAA 124607 || || | ||| | | | || || || | ||| |||| | ||| | || Sbjct 211962 GAGCCGAACTATGGCAAGCTCACGTCGATCCATTTCTACGGCTGGAAGATGGGATTGAAG 212021 Query 124608 ACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGAC 124667 |||||||||||||| || | ||||| ||||| | |||| || |||||||| || ||| Sbjct 212022 ACGGGCATGTATTATTTGCGCACCAAGCCGGCCGTTAATGCGATCCAATTTACGGTGGAC 212081 Query 124668 AAATCTAAACT 124678 ||| | ||||| Sbjct 212082 AAAACGAAACT 212092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451911884053520